CN189408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = -2 Query: 361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV--NFEELARSTDDFNGAQLKAVCVEAGMLALR 726 ID + R + + T+L L++ LDG + VI ATNR D LDPAL R GR DR++ P AR +IL IH+ K + + + +A T + GA LK +C EA ++ LR Sbjct: 498 IDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGE---VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLR 618
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13 Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = -2 Query: 358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726 IDAI KR + RE++R ++ +LL +D + + + +I ATNR D LD AL R+GR DR+I L P+E +R IL+ S + + ++F +LA+ T F GA LKA+ AG A++R Sbjct: 307 IDAITPKR---DGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVGADLKALVTAAGTCAIKR 431 HSP 2 Score: 73.1738 bits (178), Expect = 1.635e-12 Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = -2 Query: 358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ--IHSRKMTVHPDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRR 726 +DA+ +R + S R + LL +LDG + I VI ATNR D++DPA++R GRLD+ + + P+ E + I++ S + DV+FEE+ R+ ++F+GA L A+ E+ +LAL+R Sbjct: 635 LDALVPRR---DTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKR 758
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13 Identity = 53/156 (33.97%), Postives = 90/156 (57.69%), Query Frame = -2 Query: 274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNH--EDFNEGIIQVQAKKKASLNYY 726 +D++ KR + SG + R + +LL +LDG SS D + VI ATNR D+LD AL+R GR D+ + L +++ +A I++ +RK T+ ++ ++A+ ++ GA A+C +A + A+ R A EV+ E +N ++ KK SL Y+ Sbjct: 803 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAMTRVAGEVDEKWEKYN-----MENKKNISLRYW 952
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13 Identity = 47/139 (33.81%), Postives = 83/139 (59.71%), Query Frame = -2 Query: 331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726 ID+I ++R S+ +R ELL Q+DG +DD K V+AATN +D AL R RL+++I +P P+ + RA +L+I R++ + PD++ E++A T+ ++GA + +C +A ++A+RR ++ E+ Sbjct: 307 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEE 441
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12 Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = -2 Query: 346 DAIGTKR-FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 723 D+I KR DS DR V ++L Q+DG D + V+AAT+R D++D AL+R GRLD+ + P + R ILQ +R M V VN +A F+GA L+A+ A + A+ T+ Sbjct: 902 DSIAPKRGHDSTGVTDRVVN----QMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAVHEKLTK 1024
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12 Identity = 48/139 (34.53%), Postives = 83/139 (59.71%), Query Frame = -2 Query: 331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726 ID+I ++R S+ +R ELL Q+DG +DD K V+AATN +D AL R RL+++I +P P+ + RA +L+I R++ + PDV+ E++A T+ ++GA + +C +A ++A+RR ++ E+ Sbjct: 307 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRINGLSPEE 441
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12 Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = -2 Query: 340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTVHPDVNFEELA-RSTDDFNGAQLKAVCVEAGMLALRRDATEVN 726 +D++ KR + SG + R + +LL +LDG S + + VI ATNR D+LDPAL+R GR D+ + L + + + I++ +RK T+HP V+ +A R + GA A+C +A + A+ R AT V+ Sbjct: 1092 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVD 1225
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = -2 Query: 367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726 +D++G KR +S + ++T+ +LL ++DGF ++ + +I ATN + LD AL+R GR D ++ +P P + R IL+ + K+ V+ E +AR T F+GA+L+ + +A + A Sbjct: 382 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKA 499
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = -2 Query: 367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726 +D++G KR +S + ++T+ +LL ++DGF ++ + +I ATN + LD AL+R GR D ++ +P P + R IL+ + K+ V+ E +AR T F+GA+L+ + +A + A Sbjct: 440 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 557
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12 Identity = 39/120 (32.50%), Postives = 72/120 (60.00%), Query Frame = -2 Query: 367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726 +D++G KR + + ++T+++LL ++DGF ++ + +I ATN + LD AL+R GR D ++ +P P + R IL+ + K+ V+ E +AR T F+GA+L+ + +A + A Sbjct: 382 LDSVGGKRIEFPMHPYS--RQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKA 499 The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 293
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bpback to top |