CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV--NFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            ID +   R   +      +  T+L L++ LDG      + VI ATNR D LDPAL R GR DR++    P   AR +IL IH+ K   +  +    + +A  T  + GA LK +C EA ++ LR
Sbjct:  498 IDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGE---VVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLR 618          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTML-ELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDAI  KR   +    RE++R ++ +LL  +D  + +      + +I ATNR D LD AL R+GR DR+I L  P+E +R  IL+  S  + +   ++F +LA+ T  F GA LKA+   AG  A++R
Sbjct:  307 IDAITPKR---DGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVGADLKALVTAAGTCAIKR 431          

HSP 2 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ--IHSRKMTVHPDVNFEELARS--TDDFNGAQLKAVCVEAGMLALRR 726
            +DA+  +R   + S      R +  LL +LDG +    I VI ATNR D++DPA++R GRLD+ + +  P+ E +  I++    S    +  DV+FEE+ R+   ++F+GA L A+  E+ +LAL+R
Sbjct:  635 LDALVPRR---DTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKR 758          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 53/156 (33.97%), Postives = 90/156 (57.69%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEVNH--EDFNEGIIQVQAKKKASLNYY 726
            +D++  KR +   SG   + R + +LL +LDG SS  D + VI ATNR D+LD AL+R GR D+ + L    +++ +A I++  +RK T+   ++  ++A+    ++ GA   A+C +A + A+ R A EV+   E +N     ++ KK  SL Y+
Sbjct:  803 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAMTRVAGEVDEKWEKYN-----MENKKNISLRYW 952          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 47/139 (33.81%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I  R++ + PD++ E++A  T+ ++GA +  +C +A ++A+RR    ++ E+
Sbjct:  307 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRRINGLSPEE 441          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  346 DAIGTKR-FDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE 723
            D+I  KR  DS    DR V     ++L Q+DG    D + V+AAT+R D++D AL+R GRLD+ +    P  + R  ILQ  +R M V   VN   +A     F+GA L+A+   A + A+    T+
Sbjct:  902 DSIAPKRGHDSTGVTDRVVN----QMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAVHEKLTK 1024          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 48/139 (34.53%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I  R++ + PDV+ E++A  T+ ++GA +  +C +A ++A+RR    ++ E+
Sbjct:  307 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRRINGLSPEE 441          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = -2
Query:  340 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR----IKVIAATNRADILDPALMRSGRLDRKIEL-PHPSEEARARILQIHSRKMTVHPDVNFEELA-RSTDDFNGAQLKAVCVEAGMLALRRDATEVN 726
            +D++  KR +   SG   + R + +LL +LDG S  +     + VI ATNR D+LDPAL+R GR D+ + L    + + +  I++  +RK T+HP V+   +A R    + GA   A+C +A + A+ R AT V+
Sbjct: 1092 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVD 1225          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726
            +D++G KR +S +      ++T+ +LL ++DGF  ++ + +I ATN  + LD AL+R GR D ++ +P P  + R  IL+ +  K+     V+ E +AR T  F+GA+L+ +  +A + A
Sbjct:  382 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKA 499          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/120 (33.33%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726
            +D++G KR +S +      ++T+ +LL ++DGF  ++ + +I ATN  + LD AL+R GR D ++ +P P  + R  IL+ +  K+     V+ E +AR T  F+GA+L+ +  +A + A
Sbjct:  440 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 557          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 39/120 (32.50%), Postives = 72/120 (60.00%), Query Frame = -2
Query:  367 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLA 726
            +D++G KR +  +      ++T+++LL ++DGF  ++ + +I ATN  + LD AL+R GR D ++ +P P  + R  IL+ +  K+     V+ E +AR T  F+GA+L+ +  +A + A
Sbjct:  382 LDSVGGKRIEFPMHPYS--RQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKA 499          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
TBP7_CAEEL9.586e-1336.29TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
RIX7_YEAST9.586e-1338.28Ribosome biogenesis ATPase RIX7 OS=Saccharomyces c... [more]
PEX6_KLULA9.586e-1333.97Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
KATL1_RAT9.586e-1333.81Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX1_PICPA1.252e-1237.01Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
KATL1_MOUSE1.252e-1234.53Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_NEUCR1.635e-1235.56Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
YMEL1_MOUSE2.135e-1233.33ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN2.135e-1233.33ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YMEL1_RAT2.789e-1232.50ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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