CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  331 RFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR------RDATEVNHED 705
            R D    GD  V     +LL ++DG    + I VI  TNR D++D AL+R GR + ++E+  P E+ R +I  I ++KM     +  DVN  ELA  T +F+GA+++ +   A   A+       + AT++N +D
Sbjct:  361 RGDGTGVGDNVVN----QLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATKLNTKD 491          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I+ R++ + PD+  E++A   + ++GA +  VC +A ++A+RR    ++ E+
Sbjct:  309 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEE 443          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I+ R++ + PD+  E++A   + ++GA +  VC +A ++A+RR    ++ E+
Sbjct:  309 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEE 443          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 47/139 (33.81%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I+ R++ + PD+  E++A   + ++GA +  VC +A ++A+RR    +  E+
Sbjct:  309 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLGPEE 443          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  343 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-DRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEAR-ARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEV 726
            ID++  KR +   SG   + R + +LL +LDG S+D D + VI ATNR D+LD AL+R GR D+ + L  P  + +   IL+  +RK  +  DV   ELA+    ++ GA   A+C +A + A+ R A  V
Sbjct:  833 IDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIARMV 962          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 47/139 (33.81%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + RA +L+I  R++ + PD+  E++A   + ++GA +  VC +A ++A+RR    ++ E+
Sbjct:  309 IDSICSRRGTSDEH--EASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEE 443          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  361 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDV--NFEELARSTDDFNGAQLKAVCVEAGMLALR 726
            ID +   R   +      +  T+L L++ LDG      + VI ATNR D LDPAL R GR DR++    P   AR  IL IH+ K   +       + +A  T  + GA LK +C E+ ++ LR
Sbjct:  512 IDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGE---VVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCGADLKFLCTESVLIGLR 632          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGM-LALRRDATEVNHEDFNEGIIQVQAKKK 726
            +DAIG  R    + GD  V   +  LL +LDG   ++ +  IAATN   +LDPA+    R + +IE   P++E R +I++++++KM +    N +E    T  F+G  +K   ++  +  A+  D   V+ ED    + ++   ++
Sbjct:  222 LDAIGLSREYQSLRGD--VSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAIR--SRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKKILGNRR 363          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD-----DRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELA-RSTDDFNGAQLKAVCVEAGMLALRRDATEVNH--EDFNEGIIQVQAKKKASLNYY 726
            +D++  KR +   SG   + R + +LL +LDG S       D + V+ ATNR D+LD AL+R GR D+ + L    ++E +++IL+  +RK  +  +V+  E+A R +  F GA   A+C ++ + A+ R A EV+   +  NE +   Q K++ S  ++
Sbjct:  940 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQSKILEALTRKFKLADNVDLYEIAKRCSFTFTGADFYALCSDSMLNAMTRTANEVDAKIKKLNEELTS-QGKEEISTRWW 1097          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 35/103 (33.98%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  358 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 666
            R + ++L Q+DG  S D + ++AAT R D++DPAL+R GRLD+ I    P+EE R  +LQ  + +  +      ++L+  TD +  A L ++  +A ++A+ +
Sbjct:  725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHK 827          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
SEC18_YEAST2.789e-1234.07Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
KATL1_OTOGA2.789e-1233.81Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN2.789e-1233.81Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN3.643e-1233.81Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_YEAST4.757e-1238.17Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
KATL1_RABIT4.757e-1233.81Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TBP7_CAEBR8.115e-1235.48TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
PRS2_METJA8.115e-1228.77Putative 26S protease regulatory subunit homolog M... [more]
PEX6_DEBHA1.060e-1132.50Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
PEX1_SCHPO1.060e-1133.98Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
back to top