CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = -2
Query:  334 RTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHE 666
            R + + L QLDG      + V+AAT+R D++DPAL+R GRLD+ +    P    R  IL     KM + P ++ E+L+ +T  + GA L+A+   A + ++      +  E
Sbjct:  985 RVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSIHEWMNHLEEE 1095          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  331 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDG----FSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHED 726
            ID+I ++R  S+       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P P+ + R  +L+I+ R++ + PD+  E++A   + ++GA +  VC +A ++A+RR    ++ E+
Sbjct:  309 IDSICSRRGTSDEH--EASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEE 443          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTM-LELLNQLDGFS----SDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID+I ++R  SE   + E  R M  ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P PS + R  +L+I  R++ +  DVN   +A + + ++GA +  VC +A ++A+RR
Sbjct:  310 IDSICSRRGTSE---EHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-------IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID+I ++R  SE       +R   ELL Q+DG             + V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ +++ +  DVN E +A + D ++GA +  VC +A ++A+RR
Sbjct:  311 IDSICSRRGTSEEH--EASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRR 436          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-------IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID+I ++R  SE       +R   ELL Q+DG             + V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ +++ +  DVN E +A + D ++GA +  VC +A ++A+RR
Sbjct:  307 IDSICSRRGTSEEH--EASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRR 432          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  355 EVSGDREVQRTMLE----LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 693
            E S + EV++  L     LL ++DG +  + + V  ATNR ++LDPAL+R GR D+ + +  P ++ R  IL+++++K+     +++E  A  T   + A L A+  ++ +LA+  D
Sbjct: 1489 ESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFND 1605          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 43/127 (33.86%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  358 IDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSSDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID+I ++R  SE     R V+  +L  ++ + G S +D  K   V+AATN    +D AL R  RL+++I +P PS + R  +L+I+ +++ +  DVN +++A   + ++GA +  VC +A ++A+RR
Sbjct:  305 IDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRR 429          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 41/127 (32.28%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM----TVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            IDA+   R  S+ +  R+    + + L ++DG    + +  I  TNR ++LDPA +RSGR    I++  P +E R +I QIH++K+     +  DV+  +LA  T++F+GA ++ +   A + +L R
Sbjct:  682 IDAMLPSRSGSDGNPVRD--SVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLER 806          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  358 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFS----SDDRIK---VIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 726
            ID+I ++R  SE       +R   ELL Q+DG      +DD  K   V+AATN    +D AL R  RL+++I +P PS + R  +L+I  R++ +  DVN   +A + + ++GA +  VC +A ++A+RR
Sbjct:  310 IDSICSRRGTSEEH--EASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = -2
Query:  343 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIELP-HPSEEARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDATEV 726
            +D++  KR +   SG   + R + +LL +LDG S     D + V+ ATNR D+LD AL+R GR D+ + L    + E +A+I+Q  +RK  + P V+   +A +    + GA   A+C +A + A+ R A  V
Sbjct:  914 LDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAV 1045          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PEX1_DICDI1.060e-1133.33Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
KATL1_SORAR1.384e-1133.09Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_MOUSE1.808e-1137.40Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KTNA1_XENTR3.084e-1134.62Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA3.084e-1134.62Katanin p60 ATPase-containing subunit (Fragment) O... [more]
FTSH_OLTVI3.084e-1131.62Cell division protease ftsH homolog OS=Oltmannsiel... [more]
KTNA1_DANRE4.027e-1133.86Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
YR476_MIMIV5.260e-1132.28Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
KTNA1_RAT5.260e-1136.15Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
PEX6_PICAN6.869e-1134.59Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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