CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:854..1580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = -2
Query:  304 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSE-EARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDAT-----EVNHEDFNEGIIQVQ 726
            +D++   R +   SG   + R + +LL +LDG      + +I ATNR D+LD +LMR GRLDR + L   SE E + +ILQ  +RK  +  DV+  ++  +   +  GA   A+  +A   A     T     E+N E+ N+ +I  Q
Sbjct: 1020 LDSLAPSRGNGADSGG-VMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHERITASINGEINEEEQNQKLIVYQ 1166          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  358 SGDREVQRTML-ELLNQLDGFS--------SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 687
            SG+ E  R +  ELL Q+DG S        S   + V+AATN    +D AL R  RL+++I +P P  E+R  ++ I+ R + V  DVN E++AR T+ ++G  L  VC +A M  +RR
Sbjct:  350 SGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRR 466          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = -2
Query:  250 GDREVQRTM-LELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ------IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNH-EDFNEGIIQVQAKKKAS-LNYYA*THPKAK 684
            G+ E  R M  ELL Q+DG + SDD + V+AA+N    LD A++R  RL+++I +  PS+EAR  ++Q       +S  + +  D+++  L   TD ++G+ ++ VC EA M  +R+  DA E +H E  N  +I +     +  L   A T P AK
Sbjct:  372 GEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLAHTKPSAK 526          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PEX6_DICDI6.869e-1133.11Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
KTNA1_ARATH8.972e-1138.66Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL2_XENTR8.972e-1135.03Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
back to top