CN189408
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = -2 Query: 304 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSE-EARARILQIHSRKMTVHPDVNFEELARSTD-DFNGAQLKAVCVEAGMLALRRDAT-----EVNHEDFNEGIIQVQ 726 +D++ R + SG + R + +LL +LDG + +I ATNR D+LD +LMR GRLDR + L SE E + +ILQ +RK + DV+ ++ + + GA A+ +A A T E+N E+ N+ +I Q Sbjct: 1020 LDSLAPSRGNGADSGG-VMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHERITASINGEINEEEQNQKLIVYQ 1166
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2 Query: 358 SGDREVQRTML-ELLNQLDGFS--------SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR 687 SG+ E R + ELL Q+DG S S + V+AATN +D AL R RL+++I +P P E+R ++ I+ R + V DVN E++AR T+ ++G L VC +A M +RR Sbjct: 350 SGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRR 466
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11 Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = -2 Query: 250 GDREVQRTM-LELLNQLDGFS-SDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQ------IHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR--DATEVNH-EDFNEGIIQVQAKKKAS-LNYYA*THPKAK 684 G+ E R M ELL Q+DG + SDD + V+AA+N LD A++R RL+++I + PS+EAR ++Q +S + + D+++ L TD ++G+ ++ VC EA M +R+ DA E +H E N +I + + L A T P AK Sbjct: 372 GEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLAHTKPSAK 526 The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 293
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bpback to top |