CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/145 (54.48%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IK+I ATNR DILDPAL+R GR+DRKIE P PS  ARA IL+IHSRKM +   +N  ++A   +  +GA +K VC EAGM ALR     V  EDF   + +V  K +
Sbjct:  250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 79/143 (55.24%), Postives = 96/143 (67.13%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 76/145 (52.41%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L  VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  235 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.770e-36
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  298 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            +DAI  +R +S+ SGDREVQRTM++LL +LDGF     +KVI ATNR DILDPA++R GR DR IE+P P+ E R +I +IH+RKM +  DV+F+ELAR T+  +GA +KA+C EAGM A+R +  +V   DF + I +V  K
Sbjct:  243 LDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKK 385          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.724e-36
Identity = 74/133 (55.64%), Postives = 97/133 (72.93%), Query Frame = -2
Query:  328 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDAI +KR DS+ SGD EVQRTM++LL+++DGF     I++IAATNR D+LD A++R GR DR IE+PHP+   R +I +IH+R M V   V+F ELA  T D +GA +KA+C EAGM A+R D TEV  +DF
Sbjct:  251 IDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDF 383          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.724e-36
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIGTKR+DS   G+RE+QRTMLELLNQLDGF     +KVI ATN+ + LDPAL+R GR+DRKI   +P    + +IL IH+ KM +  DVN E L  + DD +GA ++A+C EAG+LALR    +V  EDF +   +V   K
Sbjct:  284 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS8_YEAST1.624e-3654.4826S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_RAT1.624e-3655.2426S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.624e-3655.2426S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.624e-3655.2426S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.624e-3655.2426S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.624e-3655.2426S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS10_BOVIN1.624e-3652.4126S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_ARCFU2.770e-3653.15Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR2_HALSA4.724e-3655.64Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS4_YEAST4.724e-3652.7826S protease regulatory subunit 4 homolog OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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