CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 81/153 (52.94%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 726
            IDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 81/153 (52.94%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 726
            IDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 81/153 (52.94%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 726
            IDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 76/144 (52.78%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  298 IDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 726
            ID+IG+ R +  +  GD EVQRTMLELLNQLDGF S   IK+I ATNR DILDPAL+R GR+DRKIE P+P+E AR  IL+IHSR+M +   +N  ++A      +GA++KA C EAGM ALR     V  ED    + +V  +
Sbjct:  258 IDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKR 401          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 75/136 (55.15%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  322 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 726
            IDAIGTKR+D++   +RE+QRTMLELLNQLDGF +  R IKVI ATNR   LDPAL+R GR+DRKI   +P E  + +I  IH+ KM +  DVN EEL +  DD +GA++KA+  EAG+LALR     V  +DF +
Sbjct:  293 IDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQ 428          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  269 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 408          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 79/153 (51.63%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI---IQVQAKKKASLNY 726
            +DAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPAL+R GRLDRK+E   P  E RA I  IH++ M+   D+ FE LAR   +  GA +++VC EAGM A+R     V+ +DF E I   I+  AK  A+  Y
Sbjct:  272 VDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYAKFSATSRY 424          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 74/140 (52.86%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDA+G  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRK+E   P    RA IL+IH+++M+V  D+ ++ LAR   +  GA++++VC EAGM A+R        +DF E I +V
Sbjct:  279 IDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKV 418          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = -2
Query:  304 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 726
            IDA+G  R ++  SGDREVQRT+++LL  +DGF +   +K+I ATNR DILD AL+R GR DR IE+P P EE R  IL++H+R +T+   VN  E+A  T+  NGA L+A+C+EAGM A+R +   +  EDF   I +V+
Sbjct:  280 IDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKVR 420          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS7_MACFA3.999e-3552.9426S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN3.999e-3552.9426S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN3.999e-3552.9426S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS8_NAEFO1.520e-3452.7826S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS4_SCHPO2.592e-3455.1526S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS7_PRUPE4.422e-3452.1426S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_DICDI4.422e-3451.6326S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_CAEEL4.422e-3452.8626S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7A_ARATH4.422e-3452.1426S protease regulatory subunit 7 homolog A OS=Ara... [more]
PSMR_METB65.775e-3449.65Proteasome-activating nucleotidase OS=Methanoregul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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