CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 67/140 (47.86%), Postives = 99/140 (70.71%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +D+I  +R +     DREVQRT+++LL ++DGF     I++IAATNR D+LDPA++R GR DR + +P P  EAR +IL+IH  KMT+  D++F++LA++T+  +GA LKA+  EAGM A+RRD   V  E+F E + +V
Sbjct:  261 LDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKV 400          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  IL+IH+ KM +  +V+  E+A+  ++  GA LKAVC EAGM A+R +   +  +DF E I ++  KK+
Sbjct:  250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KNVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKE 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = -2
Query:  286 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKAS 726
            IDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  I +IH+ KM +   V+  E+A+  ++  GA +KAVC EAGM A+R     V  +DF E +++V  KK+ S
Sbjct:  250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKVTGKKEKS 395          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 71/149 (47.65%), Postives = 100/149 (67.11%), Query Frame = -2
Query:  280 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 726
            IDAIG KR D   SG+RE+QRT+++LL ++DGF   D +K+IAATNR DILDPAL+R GR DR IE+P P+ E R  I +I+ +KM    ++ ++ LA  T+ F+GA++K VC EAG +A+R     VN  D    I +++AK   + N
Sbjct:  236 IDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTDLITAIEKIKAKNNKAKN 384          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  IL+IH+ KM +   V+  E+A+  ++  GA LKAVC EAGM A+R +   +  +DF E I ++  KK+
Sbjct:  250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKE 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = -2
Query:  328 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDAIG  R ++  SGDREVQRT+++LL  +DGF     +K+I ATNR DILD AL+R GR DR IE+P P  E R  IL++H+R M +  DV+  E+AR T+  NGA+L A+C+EAGM A+R++  +V+ EDF
Sbjct:  255 IDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDF 387          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  IL+IH+ KM +   V+  E+A+  ++  GA LKAVC EAGM A+R +   +  +DF E I ++  KK+
Sbjct:  250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKE 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 67/140 (47.86%), Postives = 98/140 (70.00%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            +D+I  +R +     DREVQRT+++LL ++DGF     I++IAATNR D+LDPA++R GR DR + +P P  EAR +IL+IH  KMT+  D++F++LA+ T+  +GA LKA+  EAGM A+R+D   V  EDF E + +V
Sbjct:  261 LDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKV 400          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PRS7_SPIOL5.775e-3452.1426S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ5.775e-3452.1426S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PSMR_METMA7.542e-3447.86Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METM79.851e-3448.97Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METVS1.287e-3348.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_SULTO1.680e-3347.65Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METMP1.680e-3348.97Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METHJ1.680e-3352.63Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METM52.195e-3348.97Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METAC2.195e-3347.86Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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