CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 70/144 (48.61%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF   D +K+IAATNR DILDPAL+R GR DR IE+P P  + R  I  I+ +KM +  ++N E L++ T+ F+GA +K VCVEA  +A+R    +V   D  E I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDA+ +KR +S   GDREVQRT+++LL ++DGF S   +K+IAATNR DILDPA++R GR DR IE+  P E+ R  IL+IH+ KM +   V+  E+A+  ++  GA LKAVC EAGM A+R +   +  +DF E I ++  KK+
Sbjct:  250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKE 393          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 72/133 (54.14%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  328 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 726
            IDAIG KR+++   G REVQRTMLELLNQLDGF + + IKVI ATN+ + LDPAL+R GR+DRKIE   P    + +I  IH+ +MT+   VN E L  S +D +GA +KA+C EAGM+ALR     V  +DF
Sbjct:  271 IDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDF 403          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D  + I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  295 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 726
            IDAIG KR D   SG+RE+QRT+++LL +LDGF+  D +K+IAATNR DILDPAL+R GR DR IE+P P    R  I  I+ +KM V  ++N E L++ ++ F+GA +K VCVEA  +A+R    +V  +D    I ++  K+
Sbjct:  236 IDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVNAITKINVKR 379          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.858e-32
Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR ++ELLNQ+DGF     +KVI ATNR D LDPAL+R GRLDRKIE P P    +  I Q+ + KM +  +V+ E+     D  +GA+++++C EAGM A+R++   +  +DF +G      K     N+Y
Sbjct:  252 IDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PSMR_SULSO2.866e-3348.61Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METM62.866e-3348.97Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_ENCCU2.866e-3354.1426S protease regulatory subunit 4 homolog OS=Encep... [more]
PSMR_SULIY6.385e-3347.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM6.385e-3347.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL6.385e-3347.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK6.385e-3347.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA6.385e-3347.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.089e-3247.92Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PRS6B_DICDI1.858e-3245.7026S protease regulatory subunit 6B homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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