CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  316 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 726
            IDAIG  R +S  SGDREV RT+++LL ++DGFS+   +++I ATNR DILD AL+R GR DR IE+P P  E R  IL IH   M +   V+  ++A  TD  NGA L+++C+EAGM A+R D   V  EDF + I
Sbjct:  255 IDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSI 391          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = -2
Query:  307 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 726
            IDAIG  RFD  V  D EVQRTMLE+L QLDGF +   IKV+ ATNR DILDPAL+R GRLDRK+E   P  E R +I +IH+R M+   D+ FE LA    +  GA +++VC+EAGM A+      V  +DF + + +V
Sbjct:  307 IDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKV 446          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.139e-32
Identity = 72/151 (47.68%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ EE     D  +GA + A+C EAGM A+R +   V  +DF +G      K ++   +Y
Sbjct:  264 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFY 414          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.139e-32
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG +RF    S DRE+QRT++ELLNQ+DGF    + K+I ATNR D LDPAL+R GRLDRKIE+P P+E  R  IL+IH  K++   ++++E L + TD  NGA L+ V  EAG +A++ D   V   D      +V   KK
Sbjct:  234 IDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKK 378          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + I +V   +K
Sbjct:  239 IDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLR-GVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKVLGNEK 382          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = -2
Query:  292 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 726
            +DAIG +RF    S DRE+QRT++ELL Q+DGF +  + K+I ATNR D LDPAL+R GRLDRK+E+P P+E  R  I +IH+ K+    + +FE   + +D FNGA ++    EAG  A+R D   +N +D  + + +V   KK
Sbjct:  283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  283 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   ++  L
Sbjct:  242 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERKLL 388          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 71/148 (47.97%), Postives = 97/148 (65.54%), Query Frame = -2
Query:  283 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 726
            IDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +  +V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   ++  L
Sbjct:  242 IDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERKLL 388          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.220e-32
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = -2
Query:  277 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL---RRDATEVNHEDFNEGIIQVQAKKKASLNY 726
            IDAIG  RFD    GD EVQRTMLEL+ QLDGF     IKV+ ATNR + LD ALMR GR+DRK+E   P  E RA IL+IH++ M +  D+ +E +AR      GA+L++VC EAGM A+   RR ATE +  D  + +++   K  ++ +Y
Sbjct:  281 IDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQKFSSTADY 433          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  274 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 726
            IDAI TKRFD++   DREVQR +LELLNQ+DGF  +  +KVI ATNRAD LDPAL+R GRLDRKIE P P    +  I    + KM +  +V+ E+     D  +GA + ++C E+GMLA+R +   V  +DF +    V  K +    +Y
Sbjct:  267 IDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFY 417          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PSMR_METPE3.169e-3250.36Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS7B_ARATH3.169e-3251.4326S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS6B_MANSE4.139e-3247.6826S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS10_SCHPO4.139e-3248.97Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_PYRFU7.059e-3249.66Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS10_YEAST7.059e-3245.5226S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_PYRHO9.220e-3247.97Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB9.220e-3247.97Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PRS7_SCHPO9.220e-3248.3726S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS6B_RAT1.573e-3146.3626S protease regulatory subunit 6B OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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