CN189402

Overview
NameCN189402
Unique NameCN189402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -1
Query:  379 YPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISPA 684
            YP  P P    GL  H D   + +LL    VPGLE    G W+K+ P  N+ + +N G Q+EV++NG  ++  HR        RLS+A+F  PA+D ++ PA
Sbjct:  193 YPPSPNPSRTLGLPPHCDRDLMTVLLPG-AVPGLEIAYKGGWIKVQPVPNSLV-INFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPA 292          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = -1
Query:  382 GLREHTDAGGIILLLQDDQVPGLEF-FKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 651
            G  EHTD   II +L+ +   GL+   KDG WV +PP  +++ F+N GD ++V++NGR++S  HRV+ +   SR+S+  F  P     I+P
Sbjct:  203 GFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPD-HSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAP 291          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = -1
Query:  367 YPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISPAIKLL 684
            YP C  P    G   H D   + +L QD  V GLE + +G W  I P R   + VN GD    LSN RY+S LHR +      R S+A F  P  D ++ P  +L+
Sbjct:  219 YPACQRPLDTLGTGPHCDPTSLTILHQD-HVGGLEVWAEGRWRAIRP-RPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELV 322          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = -1
Query:  337 KVPKYPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISPAIKLLYPSYY---SFQDY 696
            ++ KY    +   V GL  HTD   + +L QD Q+ GLE   +G+W+ + P     + VN GD  + LSNG YQS  HRV+   N  R+SIA F  P  +  I       YP  Y   SF++Y
Sbjct:  197 RLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLE-ALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEID---CFGYPKKYRRFSFREY 314          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = -1
Query:  382 YPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 684
            YP C  P    G   H D   + +L QD+ V GL+   +G W  I P R +   VN GD    LSNGRY+S LHR +      R S+A F  P  D +++P
Sbjct:  209 YPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRP-RADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAP 307          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  367 YPQCPYPEL-------VRGLREHTDAGGIILLLQDDQVPGLEF-FKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISPAIKLL 684
            YP CP           V G  EHTD   II +L+ +   GL+    DG W+ +PP  + + F N GD ++V++NGR++S  HRV+     SR+S+  F  P+    I+P   L+
Sbjct:  175 YPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPD-HTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLI 286          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = -1
Query:  382 YPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 684
            YP C  P    G   H D   + +L QD+ V GL+   +G W  I P R +   VN GD    LSNGRY+S LHR +      R S+A F  P  D +++P
Sbjct:  209 YPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRP-RADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP 307          
BLAST of CN189402 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = -1
Query:  382 YPQCPYPELVRGLREHTDAGGIILLLQDDQVPGLEFFKDGEWVKIPPSRNNTIFVNTGDQVEVLSNGRYQSALHRVMPEKNGSRLSIATFYNPANDAIISP 684
            YP C  P    G   H D   + +L QD+ V GL+   +G W  I P R +   VN GD    LSNGRY+S LHR +      R S+A F  P  D +++P
Sbjct:  209 YPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRP-RADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP 307          
The following BLAST results are available for this feature:
BLAST of CN189402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
IDS2_HORVU1.744e-1138.24Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
G2OX2_ARATH3.886e-1139.56Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
GAOX1_ORYSJ5.076e-1137.74Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX7_ARATH5.076e-1137.40Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
GAO1B_WHEAT6.629e-1138.61Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
G2OX1_ARATH6.629e-1135.09Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GAO1D_WHEAT8.658e-1138.61Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT8.658e-1138.61Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189402 ID=CN189402; Name=CN189402; organism=Citrus sinensis; type=EST; length=708bp
TTTTTTTTTTTTTTTTTGAATAAGTAAACTGGTTGATTTTTATAACCTTA
TTAGTATATTCATCAGTATAGATGAATGATAAACATAGGAAATAGAAAGT
GTCATTTTCATCTCCTTTAGAATTTAACAACATAACTCTTTATGCTAGTT
AAGAATTTAAAGAACATATTCTATGCAGAAAACATAACAGCATCAAACTG
ATGATCCCTTACATAGCAATCATTTAAGTAGTCGATAATTTTATGAAAGG
AGGATCTGGTGTCCATTGGCAATCTCCTTCATGGATTCAAGTCTAGGGAC
CTTGTCTGAAAACTTGGTGGTGCCGTAAAGCTTCAGGTAGTCTTGAAAAC
TGTAGTAACTGGGGTATAAGAGTTTGATAGCTGGAGAAATAATAGCATCG
TTAGCAGGATTATAGAAGGTTGCAATGGAGAGTCTGCTTCCATTCTTTTC
AGGCATGACGCGGTGCAAAGCACTTTGATACCTCCCATTACTCAAAACTT
CCACTTGGTCACCTGTGTTAACAAATATGGTGTTGTTTCTGGATGGAGGG
ATCTTTACCCACTCTCCATCTTTGAAAAATTCAAGACCTGGAACTTGGTC
ATCTTGGAGCAAGAGGATGATTCCACCCGCGTCAGTGTGTTCTCGTAGTC
CTCTGACGAGTTCCGGATAAGGACATTGAGGGTATTTTGGTACTTTTGTC
CCCACAAA
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