CN189401

Overview
NameCN189401
Unique NameCN189401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.370e-77
Identity = 134/200 (67.00%), Postives = 151/200 (75.50%), Query Frame = 1
Query:  112 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            G  W +AHATFY              YGNLYS+GYG NTAALSTALFNNG SCGACFEIKC +DPRWC PG  SI VTATNFC          GGWCNPP++HFDL+ P+F +I  Y+AGIVPVSYRRVPC + GGIRFT+NG  YFNLVL+TNV GAGD+  VS+KGS+TDW  MSRNWGQNWQSN+ L GQSLSF+VT
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVT 232          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.043e-77
Identity = 132/199 (66.33%), Postives = 151/199 (75.88%), Query Frame = 1
Query:  112 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKV 702
            G  W +AHATFY              YGNLYS+GYG NTAALSTALFNNG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  IA+YKAGIVPVSYRR+PC +KGGIRFTING  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF+V
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRV 227          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 4.043e-77
Identity = 132/197 (67.01%), Postives = 153/197 (77.66%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            GW   HATFY              YGNL+S+GYG  TAALSTALFN+G  CGACFE++C +DP WC PGSI V+ATNFC          GGWCNPP +HFDL++P F QIAQY+AGIVPV++RRVPC + GGIRFTING+ YF+LVLITNVGGAGD+RAVS+KGS+TD WQ MSRNWGQNWQSN+YL GQSLSF+VT
Sbjct:   31 GWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVT 227          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.837e-76
Identity = 136/196 (69.39%), Postives = 151/196 (77.04%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W +AHATFY              YGNLYS+GYG  TAALSTALF+ G+SCGACFE+ CVNDP+WC  G SI VTATNFC          GG C+PP  HFDLSQP++E+IA YK+GI+PV YRRV C R GGIRFTINGHSYFNLVL+TNVGGAGDV +VS+KGSRT WQ MSRNWGQNWQSNSYLNGQSLSF VT
Sbjct:   38 WINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVT 225          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 7.624e-76
Identity = 129/200 (64.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:  112 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            G GW  AHATFY              YGNLYS+GYG NTAALSTALFNNG SCGACFE+KC +DP+WC  GS  IF+TATNFC          GGWCNPP+ HFDL+ P+F +IA+Y+AGIVPVS+RRVPC ++GGIRFTING  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF+VT
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVT 227          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.897e-75
Identity = 134/204 (65.69%), Postives = 149/204 (73.04%), Query Frame = 1
Query:  109 YGQG-WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDP--RWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            YG G W  AHATFY              YGNLYS+GYG N AALSTALFN+G SCGACFEIKCVN P   WC PGS  I +TATNFC          GGWCNPP+ HFDL+ P+F  IA+Y+AGIVPVSYRRVPC +KGG+RFTING  YFNLVLITNV GAGD+   S+KG+ T W PMSRNWGQNWQSNS L GQ+LSF+VT
Sbjct:   31 YGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVT 234          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.101e-74
Identity = 132/202 (65.35%), Postives = 153/202 (75.74%), Query Frame = 1
Query:  112 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCV---NDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRT-DWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            G GW+ AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFE++C         C PGS+ VTATNFC          GGWCNPP+ HFD+SQPVF++IA +KAGIVPVSYRRV C +KGGIRFTINGHSYFNLVL+TNVGGAGDV AV++K  R+  WQ +SRNWGQNWQS + L+GQ+LSF+VT
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVT 262          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.260e-70
Identity = 123/204 (60.29%), Postives = 155/204 (75.98%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRW-CRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTD------WQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W   HATFY              YGNLYS+GYGT+TAALSTALFN G+SCG+C+E++C  D R  C PG  ++ VTATNFC          GGWCNPP++HFDL++P F +IA++ AGIVPVS+RRV C+RKGG+RFT+NGH+YFNLVL+TNVGGAGDVR++++KGS +       WQPMSRNWGQNWQSN+YL+G++LSF+VT
Sbjct:   28 WQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVT 231          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.480e-68
Identity = 119/196 (60.71%), Postives = 142/196 (72.45%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            GW+   ATFY              YGNLYS GYGT+TAALSTALFNNG SCGACFE++C      C  G++ VTATN C          GGWCNPP+ HFD+++P F +IAQ +AG+VPV YRRV C+++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+ WQ MS NWG NWQ+ + L+GQ LSF+VT
Sbjct:   26 GWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVT 220          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.702e-67
Identity = 122/196 (62.24%), Postives = 139/196 (70.92%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKV 702
            WT A ATFY              YG+LY  GYGT TAALSTALFN G SCGACF I C     +WC+PG SI VTATNFC          GGWCNPP++HFD+SQP +E IA Y+AGIVPV+YRRVPC R GGIRF +NGHSYF LVL+TNVGG+G V  + IKGS T W  MSRNWG NWQSN+ L+GQ+LSF+V
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRV 220          
The following BLAST results are available for this feature:
BLAST of CN189401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
EXPA3_ARATH2.370e-7767.00Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH4.043e-7766.33Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA2_ARATH4.043e-7767.01Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ARATH5.837e-7669.39Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA6_ARATH7.624e-7664.50Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA7_ORYSJ2.897e-7565.69Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ1.101e-7465.35Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ1.260e-7060.29Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ4.480e-6860.71Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.702e-6762.24Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189401 ID=CN189401; Name=CN189401; organism=Citrus sinensis; type=EST; length=705bp
GACGCTCTCTTTCTCTCTTACAAAAAGATACGCAAGCAAAAGGGTTTCAG
GAACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCT
CATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGT
GGGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTT
ATACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTT
TCAACAATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAAT
GACCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAATTT
TTGCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATC
CTCCCCAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCT
CAGTACAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAG
TAGGAAGGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACT
TAGTCCTAATCACAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTTTCA
ATCAAAGGGTCAAGAACTGATTGGCAACCCATGTCAAGGAACTGGGGTCA
AAACTGGCAAAGTAACAGTTACCTCAATGGCCAAAGCCTCTCATTTAAGG
TCACC
back to top