CN189401

Overview
NameCN189401
Unique NameCN189401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.491e-63
Identity = 114/199 (57.29%), Postives = 139/199 (69.85%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            G T+ HATFY              YG+LYS GYGT TAALSTALFN+G SCG C+ I C +  D RWC  G S+ +TATNFC          GGWCNPP +HFD++QP +E+I  Y+ GIVPV ++RV C +KGG+RF ING  YF LV I NVGGAG +++VSIKGS+T W  MSRNWG NWQSN+YL+GQ+LSF +T
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSIT 223          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.339e-63
Identity = 115/194 (59.28%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  130 AHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKV 702
            A ATFY              YGNLY+ GYG   AALS+ALFN+G  CGAC+ I C  +  +WC+PG  SI +TATN C          GGWCNPP+QHFD+SQP +E IA Y+AGIVPV+Y+RVPC R GGIRF I+GH YF LV +TNVGG+G V  +SIKGS T W  MSRNWG NWQSN+YL GQSLSF V
Sbjct:   31 AFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIV 224          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.339e-63
Identity = 112/201 (55.72%), Postives = 139/201 (69.15%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVN--DPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR--TDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            GW+   ATFY              YGNLY++GYGT TAALSTALF++G SCG C+ + C    DPRWCR G S+ VTATNFC          GGWCNPP+ HFD++QP +E+I  Y+ GIVPV++RRVPC R+GG+RFT+ G  YF LVL+TNV  AG VR++ ++GSR    W  MSRNWG NWQS +YL+GQ LSF+VT
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVT 233          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 9.667e-63
Identity = 106/195 (54.36%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W DA ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CVNDP+WC PGS+ +TATNFC          G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGGAGD++ + +KG +T W  M +NWGQNW +   L GQ +SF+VT
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVT 240          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 9.667e-63
Identity = 108/195 (55.38%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W DA ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGGAGD++ V +KG++T W  M +NWGQNW + + L GQ LSF+VT
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVT 244          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.263e-62
Identity = 112/198 (56.57%), Postives = 136/198 (68.69%), Query Frame = 1
Query:  115 QGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC-VNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKV 702
            Q WT A ATFY              YGN+YS GYGTNT ALS+AL+ +G SCGAC+ + C  +  RWC+ G S+ VTATN+C          GGWCNPP++HFD+SQP +E IA Y +GIVPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T+W  MSRNWG+NWQSN+YL GQ+LSF+V
Sbjct:   25 QQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRV 222          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.813e-62
Identity = 107/195 (54.87%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W DA ATFY              YGNL+ +GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFC            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGGAGD++ V +K ++T W  M +NWGQNW +++ L GQ LSF+VT
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVT 250          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 6.266e-62
Identity = 105/195 (53.85%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  121 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            W DA ATFY              YG+L+ +GYG  TAALSTALFN G +CGAC++I CV+DP+WC PG+I +TATNFC          G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGGAGD++ + +KG +T W  M +NWGQNW +   L GQ +SF+VT
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVT 247          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.543e-60
Identity = 108/199 (54.27%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWCRPGS-IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            GW    ATFY              YGNLY++GYG   AALSTALFN G SCG C+ I C     P WC+ G+ + +TATN C          GGWCNPP+ HFD+SQP +E I  Y+AGIVPV Y++V C R+GG+RFT++G +YF LVLITNV G+G V+A+S+KGS+T W P++RNWG NWQ NS L GQ+LSF+VT
Sbjct:   26 GWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVT 224          
BLAST of CN189401 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 107/196 (54.59%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  118 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVT 705
            GW    ATFY              YG+L+ +GYG  TAALSTALFNNG  CGAC+EI C + P+WC PGSI +TATNFC            WCNPPQ+HFDLSQP+F +IA+YKAG+VPV +RRVPC++ GG++F I G+ +F ++L  NVGGAG VRA+ IKG+RT W  M +NWGQ W +   L GQ LSF++T
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLT 282          
The following BLAST results are available for this feature:
BLAST of CN189401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
EXP11_ARATH1.491e-6357.29Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA3_ORYSJ4.339e-6359.28Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP29_ORYSJ4.339e-6355.72Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH9.667e-6354.36Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP22_ARATH9.667e-6355.38Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXPA9_ORYSJ1.263e-6256.57Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH2.813e-6254.87Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP25_ARATH6.266e-6253.85Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP28_ORYSJ1.543e-6054.27Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH2.016e-6054.59Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189401 ID=CN189401; Name=CN189401; organism=Citrus sinensis; type=EST; length=705bp
GACGCTCTCTTTCTCTCTTACAAAAAGATACGCAAGCAAAAGGGTTTCAG
GAACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCT
CATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGT
GGGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTT
ATACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTT
TCAACAATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAAT
GACCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAATTT
TTGCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATC
CTCCCCAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCT
CAGTACAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAG
TAGGAAGGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACT
TAGTCCTAATCACAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTTTCA
ATCAAAGGGTCAAGAACTGATTGGCAACCCATGTCAAGGAACTGGGGTCA
AAACTGGCAAAGTAACAGTTACCTCAATGGCCAAAGCCTCTCATTTAAGG
TCACC
back to top