CN189386

Overview
NameCN189386
Unique NameCN189386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.104e-77
Identity = 145/218 (66.51%), Postives = 174/218 (79.82%), Query Frame = 2
Query:   14 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P  I++FVLDEADEMLSRGFKDQIYDIFQ L    QV + SATMP + LE+T+KFM  P+RILVK++ELT
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT 242          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.104e-77
Identity = 145/218 (66.51%), Postives = 174/218 (79.82%), Query Frame = 2
Query:   14 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            ++++E+ D+FD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P  I++FVLDEADEMLSRGFKDQIYDIFQ L    QV + SATMP + LE+T+KFM  P+RILVK++ELT
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELT 242          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.041e-76
Identity = 140/217 (64.52%), Postives = 173/217 (79.72%), Query Frame = 2
Query:   14 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            ++YDE+ D+FDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GG SVRED + L  G  VVVGTPGRV DM++R+ L+ D++++FVLDEADEMLS GF +QIYDIFQ LP   QV + SATMP + LE+T KFM  PVRILVK+ ELT
Sbjct:   18 SNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKAELT 234          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.041e-76
Identity = 147/221 (66.52%), Postives = 176/221 (79.64%), Query Frame = 2
Query:    5 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   I++ VLDEADEML++GFK+QIYD+++ LPP  QV + SAT+P E LE+T KFM  P+RILVKRDELT
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 251          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.041e-76
Identity = 147/221 (66.52%), Postives = 176/221 (79.64%), Query Frame = 2
Query:    5 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   I++ VLDEADEML++GFK+QIYD+++ LPP  QV + SAT+P E LE+T KFM  P+RILVKRDELT
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 242          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.041e-76
Identity = 146/218 (66.97%), Postives = 175/218 (80.28%), Query Frame = 2
Query:   14 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            ++++E+ D FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQL+    E QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++ +   H+VVGTPGRVFDML R+ L P  I++FVLDEAD MLSRGFKDQIY+IFQ L   IQV + SATMP + LE+T+KFM  P+RILVK++ELT
Sbjct:   27 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELT 244          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.041e-76
Identity = 147/221 (66.52%), Postives = 176/221 (79.64%), Query Frame = 2
Query:    5 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPTRELA QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   I++ VLDEADEML++GFK+QIYD+++ LPP  QV + SAT+P E LE+T KFM  P+RILVKRDELT
Sbjct:   31 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 251          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.776e-76
Identity = 145/221 (65.61%), Postives = 177/221 (80.09%), Query Frame = 2
Query:    5 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQ+ I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPT+ELA+QI+KV+ ALGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   I++ VLDEADEML++GFK+QIYD+++ LPP  QV + SAT+P E LE+T KFM  P+RILVKRDELT
Sbjct:   30 EFQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 250          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.320e-76
Identity = 146/221 (66.06%), Postives = 176/221 (79.64%), Query Frame = 2
Query:    5 DFFTSYD-EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +F TS + +V  TFD MGL+E+LLRGIYAYGFEKPSAIQQR I    KG DVI Q+QSGTGKTATFC  +LQ LD  + E QAL+LAPTRELA QI+KV+ ALGDY+ V+ H+C+GGT+V ED R L  G HVV GTPGRVFDM+RR+SLR   I++ VLDEADEML++GFK+QIYD+++ LPP  QV + SAT+P E LE+T KFM  P+RILVKRDELT
Sbjct:   22 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELT 242          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.957e-76
Identity = 136/217 (62.67%), Postives = 174/217 (80.18%), Query Frame = 2
Query:   14 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            ++YDE+ D+FD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ+LD  +  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D   L  G  +VVGTPGR+ DM++R+ L+ D +++F+LDEADEMLSRGF +QIYDIFQLLP   QV + SATMP + LE+T KFM  PVRILVK+ ELT
Sbjct:   41 SNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELT 257          
The following BLAST results are available for this feature:
BLAST of CN189386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_HUMAN6.104e-7766.51Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN6.104e-7766.51Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_AJECN1.041e-7664.52ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A3_XENTR1.041e-7666.52Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE1.041e-7666.52Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
IF4A2_MACFA1.041e-7666.97Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
I4A3A_XENLA1.041e-7666.52Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
I4A3B_XENLA1.776e-7665.61Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
IF4A3_SALSA2.320e-7666.06Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A_EMENI3.957e-7662.67ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189386 ID=CN189386; Name=CN189386; organism=Citrus sinensis; type=EST; length=664bp
GACGGATTTCTTCACATCGTATGATGAGGTTTATGATACTTTTGATGCTA
TGGGATTGCAAGAGAATCTTCTTAGAGGCATTTATGCATATGGTTTTGAG
AAGCCTTCTGCCATTCAGCAAAGGGGGATTGTTCCATTCTGCAAGGGACT
TGATGTAATTCAACAAGCACAGTCTGGAACTGGAAAAACTGCAACTTTTT
GCTCCGGAATTTTGCAGCAGCTTGATTATGGTTTAGTTGAATGCCAAGCA
TTGGTTCTTGCTCCAACTAGGGAACTGGCGCAACAGATTGAGAAGGTTAT
GCGAGCACTTGGTGACTATCTTGGTGTCAAAGTGCATGCATGTGTAGGTG
GAACCAGTGTCCGTGAAGATCAACGCATTCTTTCAAGCGGTGTACATGTT
GTAGTTGGTACACCTGGTCGTGTGTTTGACATGTTGCGGAGGCAATCTCT
TCGCCCAGATAACATCAGGATCTTTGTGCTGGATGAGGCTGATGAAATGC
TGTCACGAGGTTTCAAAGACCAGATCTATGATATCTTCCAGTTGCTACCC
CCAAAGATTCAAGTTGGGGTTTTCTCTGCCACAATGCCACCAGAGGCCCT
TGAAATCACAAGGAAGTTCATGAATAAACCGGTTAGGATTCTGGTGAAAC
GTGATGAGCTTACC
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