CN189386

Overview
NameCN189386
Unique NameCN189386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 74/216 (34.26%), Postives = 107/216 (49.54%), Query Frame = 2
Query:   41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGI--------LQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL 661
            F      +  ++ I   GF +P+ IQ +G     KG D+I  AQ+G+GKT ++   G+        L+Q D  +V    L+LAPTRELA QI++     G Y   +     GG       R L  GV +V+ TPGR+ DML         +   VLDEAD ML  GF+ QI  I   + P  Q   +SAT P E   + R+F+  P ++++   +L
Sbjct:  253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIV----LILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDL 464          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 67/210 (31.90%), Postives = 110/210 (52.38%), Query Frame = 2
Query:   41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 658
            F++MGL E + RG+   G+  P+ IQ++ +     G D+   A++G+GKTA F   ++Q+L   D G    +AL+L+PTR+LA Q  K  + LG +  +K+   VGG S+      L+    +++ TPGR V  +   + L    +   V DEAD + S G   Q++DI   L    Q  +FSAT+P    +  +  +  P  + +  D+
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDK 259          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 67/210 (31.90%), Postives = 110/210 (52.38%), Query Frame = 2
Query:   41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 658
            F++MGL E + RG+   G+  P+ IQ++ +     G D+   A++G+GKTA F   ++Q+L   D G    +AL+L+PTR+LA Q  K  + LG +  +K+   VGG S+      L+    +++ TPGR V  +   + L    +   V DEAD + S G   Q++DI   L    Q  +FSAT+P    +  +  +  P  + +  D+
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDK 259          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 67/204 (32.84%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646
            +F  +G+ + L       G+ KPS IQQ  +    +G DVI  A++G+GKT  F   +LQ L         LVL PTRELA QI +   ALG  +G+     VGG  +      L+   H++V TPGR+ D L   +      ++  ++DEAD +L+  F+ ++  I +++P + +  +FSATM  +  ++ R  +  P R+ V
Sbjct:   45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSV 248          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 72/219 (32.88%), Postives = 111/219 (50.68%), Query Frame = 2
Query:   38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-------QQLDYGLVECQ-ALVLAPTRELAQQIEKVMRALGDYLG------VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 652
            +F  M     +LRG+   G   P+ IQ +GI     G D+I  A +G+GKT  F   ++       ++L +   E    L++ P+RELA+Q   ++      L       ++   C+GG SV+E    +  GVH++V TPGR+ D+L+++ +  D  R   LDEAD M+  GF+  I  IF     + Q  +FSATMP +     +  + KPV I V R
Sbjct:  182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 69/194 (35.57%), Postives = 107/194 (55.15%), Query Frame = 2
Query:   95 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 655
            F+ P++IQ         G DVI  A++G+GKT  F    L++++          +  A++++PTRELA QI   ++     +G KV AC+ G   +++QR +    ++VV TPGR+ D+    S+    +R  VLDEAD ML +GF+  I DI Q +P  K Q  +F+AT PP   E+   FM+ PV + +  D
Sbjct:   98 FKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKV-ACIFGGVRKDEQREVLKTANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGD 290          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RHLB_AERS4 (ATP-dependent RNA helicase rhlB OS=Aeromonas salmonicida (strain A449) GN=rhlB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 69/219 (31.51%), Postives = 114/219 (52.05%), Query Frame = 2
Query:   35 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLV-ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ--VGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            + F  MGL+  +L G+ + GF   + IQ   +    +G D+  QAQ+GTGKT  F +     L      +  LV + +A+++APTRELA QI      +    G+K+    GG    +   +L  GV +++GT GR+ D  + + +   NI++ VLDEAD M   GF   I  +F+ +P   +    +FSAT+     E+  + MN P  + ++ +++T
Sbjct:    9 EKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT 227          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 78/211 (36.97%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR---IFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646
            T+   GL   LL  I   GFEKP  IQ + +     G D I  A++G+GKT  F   +L+ + D   V        L++APTREL  QI   ++     LG+   A  GG+ V +    L  G  +VV TPGR+ D+L   S +  N+R     V+DEAD M   GF+ QI  I Q   P  Q  +FSA  P +   + RK + KPV I V
Sbjct:  286 TWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQV 496          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 2
Query:   53 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR---IFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646
            GL    L  I   G+E P++IQ + I     G DVI  A++G+GKT  F   + + + D   ++       L++ PTRELA QI K  +     L ++     GG  +++    L  G  +VV TPGR+ D+L   + R  N+R     VLDEAD M   GF+ Q+  I   + P  Q  +FSAT P     + RK + KP+ I+V
Sbjct:  563 GLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKALTKPIEIIV 768          
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 69/209 (33.01%), Postives = 109/209 (52.15%), Query Frame = 2
Query:   41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ--LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646
            F +  L++ ++  +   G++ P+ IQ+  I     G D++  AQ+G+GKTA F   IL +L     +  L   Q ++++PTRELA QI    R       +K+    GGTS R     ++ G HVV+ TPGR+ D + R  +  ++ R  VLDEAD ML  GF + +  I     + P+ Q  +FSAT P E   +  +F+   V + +
Sbjct:  247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAI 455          
The following BLAST results are available for this feature:
BLAST of CN189386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH30_ORYSJ7.830e-2434.26DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
RH29_ORYSJ7.830e-2431.90DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI7.830e-2431.90DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
DDX47_CAEEL7.830e-2432.84Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DDX41_MOUSE7.830e-2432.88Probable ATP-dependent RNA helicase DDX41 OS=Mus m... [more]
DBP3_ASPTN7.830e-2435.57ATP-dependent RNA helicase dbp3 OS=Aspergillus ter... [more]
RHLB_AERS41.023e-2331.51ATP-dependent RNA helicase rhlB OS=Aeromonas salmo... [more]
RH45_ORYSJ1.023e-2336.97DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
PRP5_ASPCL1.023e-2334.47Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
VASA_DROME1.336e-2333.01ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189386 ID=CN189386; Name=CN189386; organism=Citrus sinensis; type=EST; length=664bp
GACGGATTTCTTCACATCGTATGATGAGGTTTATGATACTTTTGATGCTA
TGGGATTGCAAGAGAATCTTCTTAGAGGCATTTATGCATATGGTTTTGAG
AAGCCTTCTGCCATTCAGCAAAGGGGGATTGTTCCATTCTGCAAGGGACT
TGATGTAATTCAACAAGCACAGTCTGGAACTGGAAAAACTGCAACTTTTT
GCTCCGGAATTTTGCAGCAGCTTGATTATGGTTTAGTTGAATGCCAAGCA
TTGGTTCTTGCTCCAACTAGGGAACTGGCGCAACAGATTGAGAAGGTTAT
GCGAGCACTTGGTGACTATCTTGGTGTCAAAGTGCATGCATGTGTAGGTG
GAACCAGTGTCCGTGAAGATCAACGCATTCTTTCAAGCGGTGTACATGTT
GTAGTTGGTACACCTGGTCGTGTGTTTGACATGTTGCGGAGGCAATCTCT
TCGCCCAGATAACATCAGGATCTTTGTGCTGGATGAGGCTGATGAAATGC
TGTCACGAGGTTTCAAAGACCAGATCTATGATATCTTCCAGTTGCTACCC
CCAAAGATTCAAGTTGGGGTTTTCTCTGCCACAATGCCACCAGAGGCCCT
TGAAATCACAAGGAAGTTCATGAATAAACCGGTTAGGATTCTGGTGAAAC
GTGATGAGCTTACC
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