CN189386
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 74/216 (34.26%), Postives = 107/216 (49.54%), Query Frame = 2 Query: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGI--------LQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL 661 F + ++ I GF +P+ IQ +G KG D+I AQ+G+GKT ++ G+ L+Q D +V L+LAPTRELA QI++ G Y + GG R L GV +V+ TPGR+ DML + VLDEAD ML GF+ QI I + P Q +SAT P E + R+F+ P ++++ +L Sbjct: 253 FQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIV----LILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLARQFLQNPYKVIIGSPDL 464
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 67/210 (31.90%), Postives = 110/210 (52.38%), Query Frame = 2 Query: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 658 F++MGL E + RG+ G+ P+ IQ++ + G D+ A++G+GKTA F ++Q+L D G +AL+L+PTR+LA Q K + LG + +K+ VGG S+ L+ +++ TPGR V + + L + V DEAD + S G Q++DI L Q +FSAT+P + + + P + + D+ Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDK 259
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 67/210 (31.90%), Postives = 110/210 (52.38%), Query Frame = 2 Query: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 658 F++MGL E + RG+ G+ P+ IQ++ + G D+ A++G+GKTA F ++Q+L D G +AL+L+PTR+LA Q K + LG + +K+ VGG S+ L+ +++ TPGR V + + L + V DEAD + S G Q++DI L Q +FSAT+P + + + P + + D+ Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAG-AGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDK 259
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 67/204 (32.84%), Postives = 107/204 (52.45%), Query Frame = 2 Query: 38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646 +F +G+ + L G+ KPS IQQ + +G DVI A++G+GKT F +LQ L LVL PTRELA QI + ALG +G+ VGG + L+ H++V TPGR+ D L + ++ ++DEAD +L+ F+ ++ I +++P + + +FSATM + ++ R + P R+ V Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSV 248
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 72/219 (32.88%), Postives = 111/219 (50.68%), Query Frame = 2 Query: 38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-------QQLDYGLVECQ-ALVLAPTRELAQQIEKVMRALGDYLG------VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 652 +F M +LRG+ G P+ IQ +GI G D+I A +G+GKT F ++ ++L + E L++ P+RELA+Q ++ L ++ C+GG SV+E + GVH++V TPGR+ D+L+++ + D R LDEAD M+ GF+ I IF + Q +FSATMP + + + KPV I V R Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 69/194 (35.57%), Postives = 107/194 (55.15%), Query Frame = 2 Query: 95 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 655 F+ P++IQ G DVI A++G+GKT F L++++ + A++++PTRELA QI ++ +G KV AC+ G +++QR + ++VV TPGR+ D+ S+ +R VLDEAD ML +GF+ I DI Q +P K Q +F+AT PP E+ FM+ PV + + D Sbjct: 98 FKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKV-ACIFGGVRKDEQREVLKTANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGD 290
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RHLB_AERS4 (ATP-dependent RNA helicase rhlB OS=Aeromonas salmonicida (strain A449) GN=rhlB PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 69/219 (31.51%), Postives = 114/219 (52.05%), Query Frame = 2 Query: 35 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL------DYGLV-ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ--VGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664 + F MGL+ +L G+ + GF + IQ + +G D+ QAQ+GTGKT F + L + LV + +A+++APTRELA QI + G+K+ GG + +L GV +++GT GR+ D + + + NI++ VLDEAD M GF I +F+ +P + +FSAT+ E+ + MN P + ++ +++T Sbjct: 9 EKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMT 227
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 78/211 (36.97%), Postives = 105/211 (49.76%), Query Frame = 2 Query: 38 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR---IFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646 T+ GL LL I GFEKP IQ + + G D I A++G+GKT F +L+ + D V L++APTREL QI ++ LG+ A GG+ V + L G +VV TPGR+ D+L S + N+R V+DEAD M GF+ QI I Q P Q +FSA P + + RK + KPV I V Sbjct: 286 TWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQV 496
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: PRP5_ASPCL (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus clavatus GN=prp5 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 2 Query: 53 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVECQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR---IFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646 GL L I G+E P++IQ + I G DVI A++G+GKT F + + + D ++ L++ PTRELA QI K + L ++ GG +++ L G +VV TPGR+ D+L + R N+R VLDEAD M GF+ Q+ I + P Q +FSAT P + RK + KP+ I+V Sbjct: 563 GLGVQALDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLDNMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATFPRNMEALARKALTKPIEIIV 768
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23 Identity = 69/209 (33.01%), Postives = 109/209 (52.15%), Query Frame = 2 Query: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ--LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 646 F + L++ ++ + G++ P+ IQ+ I G D++ AQ+G+GKTA F IL +L + L Q ++++PTRELA QI R +K+ GGTS R ++ G HVV+ TPGR+ D + R + ++ R VLDEAD ML GF + + I + P+ Q +FSAT P E + +F+ V + + Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAI 455 The following BLAST results are available for this feature:
BLAST of CN189386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189386 ID=CN189386; Name=CN189386; organism=Citrus sinensis; type=EST; length=664bpback to top |