EY676446

Overview
NameEY676446
Unique NameEY676446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length991
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676446_ssr19 microsatellite EY676446_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.972e-45
Identity = 85/173 (49.13%), Postives = 117/173 (67.63%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            H+  +  G  + L +DQ+SG GF SK  Y  G   M+IK+  G++ G VTAFY+ S      DE+DFEFLGN  G+P T+QTN++ NG+G+RE+R  LWF+P   YH Y +LWN + IVFYVD++PIRVYKN     +P ++PM V ++LW  DDWAT GG  K++ S +PF+
Sbjct:   47 HVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGG-HDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFI 217          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.189e-44
Identity = 99/229 (43.23%), Postives = 138/229 (60.26%), Query Frame = 3
Query:   24 GRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL----------CLLQKI*N*GAAQFRNQQTVPRNPGTWWEGKKITK-PLPPLGKQKKNKKGF 671
            G  ++LVLD+++G    SK  +LFG V M IKLVPG+SAGTV A+Y++S T +  DE+DFEFLGN TGQPYT+ TN+YA GKG+REQ+   WF+P   +H YTI WN   +V++VD  PIRV++N  S    +P  Q M V+++LW A+DWAT+GG  K + +  PF+          CL +     G+   + Q   P     WW     ++     L K +K + GF
Sbjct:   46 GTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSS-TGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWK-----GSVSIK-QCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGF 267          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.649e-44
Identity = 87/174 (50.00%), Postives = 120/174 (68.97%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRA--PFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPF 518
            H+ ++  G+ +QL +D +SG GF SK  Y  G   M+IKL P DSAG VTAFY+ S  +   DE+DFEFLGNR G+P  +QTN+++NG+G REQ+   WFDP   +H Y ILWN + IVFYVD VPIRV+KN  ++   +P ++PM + ++LW  ++WAT GG EKI+ +  PF
Sbjct:   44 HILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDT-HDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPF 215          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.525e-43
Identity = 93/208 (44.71%), Postives = 130/208 (62.50%), Query Frame = 3
Query:   12 QIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRN-QQTVPRNPGTWWEGKKITK 626
            ++  G+ +QL LD +SG GF SK  Y  G   ++IK+ P D++G VTAFY+ S   N  DE+DFEFLGN+ G+   VQTN++ NGKG+REQ++ LWFDP+ D+H Y ILWN + IV YVD++P+RV+KN  S    +P ++PM V  +LW  ++WAT GG  KI+ S  PF    Q   N G   F N ++    +   WW     +K
Sbjct:   54 KLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKG-NTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGC--FTNAEKNACGSSAYWWNTGSYSK 256          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 80/170 (47.06%), Postives = 105/170 (61.76%), Query Frame = 3
Query:   33 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV--RDELDFEFLGNRTGQPYTVQTNIYANGKGDR-----EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            + L LD+++G GF S R Y  G     IKL PG +AG  T+ Y+++N E+    DE+D EFLG   G+PY++QTN++  G GDR     E +  LWFDP  D+H Y ILWN + IVF+VDDVPIR Y     A FP  +PM VY ++W+A DWAT  G  K D    PF+
Sbjct:   59 VTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFP-TRPMWVYGSIWDASDWATENGRIKADYRYQPFV 227          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.402e-37
Identity = 79/174 (45.40%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   18 QGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGK--GDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            Q G++++L LD+ +G GF S   YL G  S  IKL    +AG V AFYM++    E   DE+DFEFLGN   + + VQTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+F+VD+VPIR  K +      FP ++PM +Y+T+W+   WAT GG   ++    P++
Sbjct:   48 QDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYI 220          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.097e-37
Identity = 80/172 (46.51%), Postives = 108/172 (62.79%), Query Frame = 3
Query:   24 GRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            G++++L LD+ +G GF S   YL G  S  IKL    SAG V AFY+++    E   DE+DFEFLGN  G+ + +QTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   ++    P++
Sbjct:   50 GKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYV 220          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.529e-36
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 3
Query:   30 AIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTEN--VRDELDFEFLGNRTGQPYTVQTNIYANGKGD-----REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPF 518
            A+ + LD+ SG GF S + +  G     IKL PG +AG +T+ Y+++N  +    DE+D EFLG   G+PYT+QTN+Y  G GD     RE +  LWFDP  D+H Y ILW+   I+F VDD+PIR Y     + FP+ +PM +Y ++W+A  WAT  G  K D    PF
Sbjct:   62 ALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL-RPMWLYGSIWDASSWATEDGKYKADYKYQPF 230          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.318e-35
Identity = 77/169 (45.56%), Postives = 104/169 (61.54%), Query Frame = 3
Query:   30 AIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNT--ENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR-VYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            +++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    E   DELD EFLGN  G+P+  QTN+Y NG   R  E+R  LWFDP+ ++H Y+ILW  H I+F+VDDVPIR V +N         +PM +Y+T+W+A DWAT GG  K +    PF+
Sbjct:   53 SVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFV 221          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.246e-34
Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            H  Q+ G  A +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N G   + +P ++PM +Y T+W+  +WAT+GG   ++    PF+
Sbjct:   54 HNIQVNGSLA-KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFV 230          
The following BLAST results are available for this feature:
BLAST of EY676446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH3_ARATH6.972e-4549.13Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH26_ARATH1.189e-4443.23Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH2.649e-4450.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH6.525e-4344.71Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.273e-3847.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH2.402e-3745.40Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.097e-3746.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH4.529e-3643.53Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH1.318e-3545.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH3.246e-3441.11Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676446 ID=EY676446; Name=EY676446; organism=Citrus sinensis; type=EST; length=991bp
CCCATCTCAGGCAAATCCAGGGAGGGAGGGCCATCCAGCTAGTTCTAGAC
CAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCG
TGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCA
CTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGAT
TTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAA
TATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGT
TTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCAC
CATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAG
TGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCAACGC
TGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGAT
TGAAGCAAAACTCCTTTTTTATGCTTATTACAGAAAATTTGAAATTGAGG
GGCTGCCCAGTTCCGGAACCAGCAAACTGTGCCTCGAAACCCAGGTACCT
GGTGGGAAGGCAAAAAAATAACCAAGCCCCTCCCCCCCCTGGGAAAACAA
AAAAAAAACAAAAAGGGGTTCCGTCCCCAACCCCCCTTGATTTTTGGATT
TTTTTGGCCCTGGATAAATCAAAAAACCCCCCGTTCCCCCCCCCCGGGAA
AGGCCCTTTGGCGGCCATAAAAAATTTTCAACCCCCCCCAATTTATATTT
AAACCTTTTGGGGGAGGGGGAACCCCCAAAACCCCCGTTTACTAAAAACC
ATGGGATATATTTATTTCCCCCCGTATCCCCCCCCCCTTTTTTTTTTATT
ATTTTTCCCCTATTTTTCTTTGGGGGAAAAAAAAAAAACATATTATACTC
ACCACCTAATTATAAGAGGGGGGGGGGGGGGGGGGGGGGGG
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