EY676446

Overview
NameEY676446
Unique NameEY676446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length991
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676446_ssr19 microsatellite EY676446_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.231e-34
Identity = 76/171 (44.44%), Postives = 108/171 (63.16%), Query Frame = 3 
Query:   27 RAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR--VYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR  + K      +P  +PM +Y+T+W+A  WAT GG   +D + +PF+
Sbjct:   60 RSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWATSGGKFGVDYTFSPFV 229
[Close]
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.929e-28
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 3 
Query:   33 IQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPM 434
            +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M
Sbjct:   45 LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTM 176
The following BLAST results are available for this feature:
BLAST of EY676446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH29_ARATH7.231e-3444.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH5.929e-2846.27Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676446 ID=EY676446; Name=EY676446; organism=Citrus sinensis; type=EST; length=991bp
CCCATCTCAGGCAAATCCAGGGAGGGAGGGCCATCCAGCTAGTTCTAGAC
CAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCG
TGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCA
CTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGAT
TTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAA
TATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGT
TTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCAC
CATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAG
TGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCAACGC
TGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGAT
TGAAGCAAAACTCCTTTTTTATGCTTATTACAGAAAATTTGAAATTGAGG
GGCTGCCCAGTTCCGGAACCAGCAAACTGTGCCTCGAAACCCAGGTACCT
GGTGGGAAGGCAAAAAAATAACCAAGCCCCTCCCCCCCCTGGGAAAACAA
AAAAAAAACAAAAAGGGGTTCCGTCCCCAACCCCCCTTGATTTTTGGATT
TTTTTGGCCCTGGATAAATCAAAAAACCCCCCGTTCCCCCCCCCCGGGAA
AGGCCCTTTGGCGGCCATAAAAAATTTTCAACCCCCCCCAATTTATATTT
AAACCTTTTGGGGGAGGGGGAACCCCCAAAACCCCCGTTTACTAAAAACC
ATGGGATATATTTATTTCCCCCCGTATCCCCCCCCCCTTTTTTTTTTATT
ATTTTTCCCCTATTTTTCTTTGGGGGAAAAAAAAAAAACATATTATACTC
ACCACCTAATTATAAGAGGGGGGGGGGGGGGGGGGGGGGGG
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