CN189370

Overview
NameCN189370
Unique NameCN189370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189370_ssr274 microsatellite CN189370_ssr274:274..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:780..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  +  ++F  AIW WMT  + ++PS H+  +G W P+  DT + R P +G   NI+ G   C  G   A+ + +  Y  Y  +L V        E L C  QK F
Sbjct:  148 PDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNV-----PTGENLDCNNQKNF 250          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMN-NIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            PE +E +  +AF+ A+W WMTP +  +PS H     +W P+  D+ + R P +G   NI+ G   CGQG  +  N N +  Y  Y D LG      G N  L C +Q+ F
Sbjct:  189 PELVETDPFIAFKTALWFWMTP-QSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGT---TYGSN--LDCYQQRPF 292          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = -1
Query:  364 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 690
            P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D+L VG         L C  Q+ F
Sbjct:  218 PDLVATDPTVSFKTAMWFWMT-AQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGY-----GNNLDCYNQRPF 320          
BLAST of CN189370 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = -1
Query:  439 PEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYY 690
            P+ +  +  ++F++AIW WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G    + + +  Y  Y
Sbjct:  217 PDLVATDPVISFKSAIWFWMTP-QSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRY 299          
The following BLAST results are available for this feature:
BLAST of CN189370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIA_SOLCI1.659e-1132.11Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_POPTR2.167e-1136.36Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIA_SECCE2.830e-1132.11Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI4_SOLTU3.697e-1134.52Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189370 ID=CN189370; Name=CN189370; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTTAATAAAATATAAGCATATACTTTACAATTCTGCTATT
GAAACACACGAGTGGTTCATGCGGTTCATCATTACATATGTAACCAGATA
TAACGAAGATTTTACAAACCAAATGAATCTCAAATCTACAACGGCAATGA
AGAGGGGCAGACCAATCCACACACTAATTGACCTTGCGCAATATATGAAA
AGATGGAAAAAAAAAAAAAAACTTACAACAAATAGTTTAATTAACCCCAG
TCTTATTGTAATGGTACCCACCTAGAGAGAGAGAGAGAGTCACTCCCACA
ATAATAGCTTGGCTACAATAAACGTCCTCAAGAAGATGCAGCTGAAGGTG
CGGTGTTTGGGTTGAAGGCTTTCTGCTCAGCACAAGAGAGTTCTTCATTA
GGTCCTGCCTGCTCTCGGCCAACACCCAACAGATCAAGGTAATACAAGTA
ATGAGAGACAATGTTGTTCATAGCATCAATATCACCCTGACCGCATACGC
TCTCACCATAGAGGATATTCATTGTGGTACCAAAGTTAGGTCCCCGTTTG
GACAAAGTATCATTCTTGGTGGGCTTCCAGTTGCCAACAAAGGCATCATG
GGCTGAAGGCTGGGATTTCTTGACTGGGGTCATCCACTTCCAAATTGCAG
CCTCAAAGGCAAGGGTAGCATTCTGCTCAATGTATTCGGG
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