CN189366

Overview
NameCN189366
Unique NameCN189366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2727 contig Csv1_Contig2727:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 55/89 (61.80%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  410 WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNW 676
            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGGAGD++ V +KG++T W  M +NWGQNW
Sbjct:  140 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNW 228          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 2
Query:  401 AGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            +GGWCNPP+ HFD+++P + QI  YKAGI+PV Y++V C R+GGIRFT+ G ++F LVL++NV G+G VR+VS+KG  T W  ++RNWG NWQ N
Sbjct:  117 SGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCN 211          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNW 676
            G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGGAGD++ + +KG +T W  M +NWGQNW
Sbjct:  141 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNW 231          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNW 676
            G WCNPPQ+HFDLS P+F +IAQYKAG+VPV YRR+ C+R GG++F   G+ YF ++L  NVGGAGD++ + +KG +T W  M +NWGQNW
Sbjct:  134 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNW 224          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 56/91 (61.54%), Postives = 74/91 (81.32%), Query Frame = 2
Query:  410 WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            WCNPPQ+HFDLSQP+F +IA+YKAG+VPV +RRVPC++ GG++F I G+ +F ++L  NVGGAG VRA+ IKG+RT W  M +NWGQ W +
Sbjct:  178 WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWST 268          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 2
Query:  410 WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSN 685
            WCNPPQ+HFDLS  +F +IA+YKAG+VPV YRR+PCS+ GG++F   G+ YF +VLI NVGGAGD++ V +K ++T W  M +NWGQNW ++
Sbjct:  146 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTS 237          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQS 682
            GGWCNPP+ HFDL++P F +IA +KAGI+PVSYRRV C + GGIRF   G+ Y+ LV + NVGG GD++ +++KGSRT W  MS NWG ++Q+
Sbjct:  120 GGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQA 212          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQ 679
            GGWCN  + HFD+SQP +E I  Y AGI+P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ
Sbjct:  112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQ 203          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQ 679
            GGWCN  + HFD+SQP +E I  Y AGIVP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS T W  MSRNWG NWQ
Sbjct:  112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQ 203          
BLAST of CN189366 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  404 GGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQ 679
            GGWCN P++HF++S+  F ++A+ KA IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ
Sbjct:  124 GGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQ 215          
The following BLAST results are available for this feature:
BLAST of CN189366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP22_ARATH3.161e-3161.80Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ORYSJ5.392e-3157.89Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH7.042e-3159.34Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH7.042e-3159.34Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP24_ARATH9.197e-3161.54Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP26_ARATH2.049e-3058.70Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP18_ARATH1.734e-2958.06Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP19_ORYSJ2.265e-2957.61Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ2.265e-2958.70Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.468e-2860.87Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189366 ID=CN189366; Name=CN189366; organism=Citrus sinensis; type=EST; length=685bp
TTTTATTAAGATTTTGGTGACCTGCCATGCAAGCGCACCTGCCATGGCAA
AGGCCGGATGACAAAGAATAATCAGGTCTCAGCCATCTTAATTTCAGGCT
TCTCTGTCCTGACGCATCTCTTACATCCATTATAAAAACCCTCCACAATC
CCGCAATTCACTCCCAATTATGCGGCACAAGCCTACCCGCATGATCAATT
AGCGGCTCAAAATTATTTATCACACATTCAGGCTTTACACCTTAAAGATG
AACAATGAGCTTAGCCTTCACATCAAATCCCAGAACGGTGAACAAACCGT
TCGGTGCCATCAAAACTTGTAAAATATATCGGCCAACCTCCTGTCCGCCT
CCGGTCCAGGTATTCCTTTTTGCCCTCCAAATAATGCTCTCCCAAACAAT
GCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCC
TGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTT
ACAGAAGGGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAAC
GGCCATTCTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGG
TGATGTGCGTGCTGTTTCAATCAAAGGGTCAAGAACTGATTGGCAACCCA
TGTCAAGGAACTGGGGTCAAAACTGGCAAAGTAAC
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