CN189365

Overview
NameCN189365
Unique NameCN189365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L+TNVGGAGDV AVS+KGSR+ WQ MS NWG NWQ+ + L+GQ LSF+VT SDG TV S+NVAP+GWSFGQTFSG Q
Sbjct:  171 LVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQ 247          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.176e-26
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L++NVGG G +++VSIKGSRT W  MSRNWG NWQSN+YL+GQSLSFKVT+SDG T+   +VAPAGW+FGQTFS  Q
Sbjct:  182 LVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L+TNVGGAGDV AV++K  R+  WQ +SRNWGQNWQS + L+GQ+LSF+VTT DG +VVSNN  P GWSFGQTFSG Q
Sbjct:  212 LVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQ 289          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTD------WQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L+TNVGGAGDVR++++KGS +       WQPMSRNWGQNWQSN+YL+G++LSF+VT  DG ++   +VAPAGW FGQTF G Q
Sbjct:  176 LVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQ 258          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            L+TNV GAGD+  VS+KGS+TDW  MSRNWGQNWQSN+ L GQSLSF+VT SD  +  S NVAPA W FGQTFSG
Sbjct:  183 LVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSG 257          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            L+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF+V TSDG +  SNN+AP+ W FGQT+SG
Sbjct:  179 LVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSG 253          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.452e-24
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            LITNV GAGD+   S+KG+ T W PMSRNWGQNWQSNS L GQ+LSF+VT SD  T  S N APAGW FGQTF G
Sbjct:  185 LITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEG 259          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.203e-24
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIK---GSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            L++NVGGAGDV AV++K   G +  WQ M+RNWGQNWQS + L+GQ+LSF VTT D  +VVS NVAPAGW+FGQTF+G Q
Sbjct:  183 LVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQ 262          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.711e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = -3
Query:  409 ITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 627
            I NVGGAG +++VSIKGS+T W  MSRNWG NWQSN+YL+GQ+LSF +TT+DG T V  NV P+ WSFGQ +S
Sbjct:  175 IQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            LITNV GAGD+   S+KGS+T W  ++RNWGQNWQSN+ L GQSLSF+VT+SD  T  S N+AP+ W FGQTF G
Sbjct:  181 LITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVG 255          
The following BLAST results are available for this feature:
BLAST of CN189365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP11_ORYSJ1.064e-2772.73Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ1.176e-2670.13Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ4.469e-2669.23Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ1.698e-2562.65Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH2.897e-2570.67Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH3.783e-2568.00Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ2.452e-2469.33Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ3.203e-2465.00Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.711e-2365.75Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP16_ARATH3.541e-2364.00Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189365 ID=CN189365; Name=CN189365; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTACTGAGAGAACTGATACATAATTTTATTCACCAAAGTCACAAG
ACATAACATTGATCATTAAAAAAAAAAATTAAAGACACATCCAGCAAAAG
GCTAATAATATTATAAGCACAGTTGCTCAGTTTATAGATGGCGGGTGGTA
CATGCCCTCCACTGCCAGCCAATTTCTGTCTCTGCCAATTTCAAAATTAG
AGCAGAGCAGAAACCACCGTACTAGAATACATAATCAAAATATAAAACGC
CAAAGGGCCATTTCAAAATAAGCCCTTTGTCATTTTGATACCAGATTCAA
CTAATTAACGCTATTACACTCATTATTTTATACTTGAAAATGTGAAAAAA
AAAAAAAAAACTGCTGGATTTTGGAGGCTGAGTTTCAACTTCAGGGAACT
TGCAGGCCACTGAAGGTTTGGCCAAAGGACCAGCCAGCTGGGGCAACATT
GTTAGAGACAACAGTGTGGCCATCACTTGTGGTGACCTTAAATGAGAGGC
TTTGGCCATTGAGGTAACTGTTACTTTGCCAGTTTTGACCCCAGTTCCTT
GACATGGGTTGCCAATCAGTTCTTGACCCTTTGATTGAAACAGCACGCAC
ATCACCAGCGCCTCCGACGTTTGTGATTAGGA
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