CN189365

Overview
NameCN189365
Unique NameCN189365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.541e-23
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LITNV G+GD+ AV IKGSRT W PM RNWGQNW  N+ L  Q+LSF+VT+SD  TV S NV+P  W++GQTF G Q
Sbjct:  186 LITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQ 262          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            L+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF+VT+SD  +  S N+APA W FGQTF G
Sbjct:  178 LVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMG 252          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.757e-22
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF-SGLQ 630
            LITNVGG G +++V IKG++T W  MSRNWG NWQ+N+YLN Q++SF VT++ G T+V  +VAP+ W FGQTF SG+Q
Sbjct:  171 LITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQ 248          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  406 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSG 630
            LITNV GAGD+   S+KGSRT W  +SRNWGQNWQSN+ L GQ+LSF+VT SD  T  S N+ P+ W FGQTF G
Sbjct:  178 LITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVG 252          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.488e-21
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  409 ITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 627
            + NVGG+G V  VSIKGS+TDW  MSRNWGQNWQSN+YLN QSLSFKV   D   V   N+AP+ W+FG T++
Sbjct:  171 VFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            L+TNVGG+G V  + IKGS T W  MSRNWG NWQSN+ L+GQ+LSF+V   DG  V + +VAPAGWSFG T++
Sbjct:  172 LVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYT 245          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF+VT   G TVV+ +VAP  W F QTF G Q
Sbjct:  181 LITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQ 257          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  412 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 630
            L+TNV G+G V A  +KGS T+W  MSRNWG+NWQSN+YL GQ+LSF+V   DG  V + +VAPA W FG T+
Sbjct:  174 LVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = -3
Query:  409 ITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 627
            +TNVGG+G V  +SIKGS T W  MSRNWG NWQSN+YL GQSLSF V   DG  V + NVAP+ W FG T+S
Sbjct:  177 VTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LITNV G+G V+A+S+KGS+T W P++RNWG NWQ NS L GQ+LSF+VT++ G T+  N+V P  W FG TF+  Q
Sbjct:  175 LITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFTSNQ 251          
The following BLAST results are available for this feature:
BLAST of CN189365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP13_ARATH3.541e-2363.64Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXPA6_ARATH1.757e-2262.67Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP12_ORYSJ1.757e-2260.26Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA4_ARATH2.998e-2264.00Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP33_ORYSJ1.488e-2163.01Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ7.383e-2160.81Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ORYSJ1.259e-2061.04Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ1.645e-2058.90Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ1.645e-2063.01Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP28_ORYSJ1.645e-2057.14Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189365 ID=CN189365; Name=CN189365; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTACTGAGAGAACTGATACATAATTTTATTCACCAAAGTCACAAG
ACATAACATTGATCATTAAAAAAAAAAATTAAAGACACATCCAGCAAAAG
GCTAATAATATTATAAGCACAGTTGCTCAGTTTATAGATGGCGGGTGGTA
CATGCCCTCCACTGCCAGCCAATTTCTGTCTCTGCCAATTTCAAAATTAG
AGCAGAGCAGAAACCACCGTACTAGAATACATAATCAAAATATAAAACGC
CAAAGGGCCATTTCAAAATAAGCCCTTTGTCATTTTGATACCAGATTCAA
CTAATTAACGCTATTACACTCATTATTTTATACTTGAAAATGTGAAAAAA
AAAAAAAAAACTGCTGGATTTTGGAGGCTGAGTTTCAACTTCAGGGAACT
TGCAGGCCACTGAAGGTTTGGCCAAAGGACCAGCCAGCTGGGGCAACATT
GTTAGAGACAACAGTGTGGCCATCACTTGTGGTGACCTTAAATGAGAGGC
TTTGGCCATTGAGGTAACTGTTACTTTGCCAGTTTTGACCCCAGTTCCTT
GACATGGGTTGCCAATCAGTTCTTGACCCTTTGATTGAAACAGCACGCAC
ATCACCAGCGCCTCCGACGTTTGTGATTAGGA
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