CN189365

Overview
NameCN189365
Unique NameCN189365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.979e-18
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  400 LITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFSGLQ 630
            LI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF+VT   G T+ S +VAP  W FG T+ G Q
Sbjct:  177 LISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQ 253          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = -3
Query:  409 LITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTFS 630
            +I+NVGG G VR+V+++GS+   W  M+RNWG NWQS+  L GQ LSFKVT +D  T    NV P+ W FGQTFS
Sbjct:  171 MISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFS 245          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.953e-17
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  412 ITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVSNNVAPAGWSFGQTF 627
            + NVGGAGD++++++KGSRT+W  MS NWG ++Q+ S L GQSLSF+VT+ + G T+ + NVAPA WS G+T+
Sbjct:  183 VMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTY 255          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -3
Query:  412 LITNVGGAGDVRAVSIKGS-RTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 630
            +++NVGGAGDV  +S+KG+ R  W P+ RNWGQ WQ++  L G+SL+F+V T D     S +V P  W FG T+
Sbjct:  189 MVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTY 262          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = -3
Query:  412 ITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVSNNVAPAGWSFGQTF 627
            + NVGG GD++ +++KGSRT W  MS NWG ++Q+ S L GQSLSF++T+ +   T+ + N APA WS G+T+
Sbjct:  178 VMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.301e-14
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  406 NVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSF-GQTFSG 621
            NVGGAG VRA+ IKG+RT W  M +NWGQ W +   L GQ LSF++TTSDG      +V P  W   GQ+F G
Sbjct:  236 NVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = -3
Query:  412 LITNVGGAGDVRAVSIKGS-RTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNNVAPAGWSFGQTF 630
            ++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++ + L G+SL+F+V T D     S  VAP  W++  T+
Sbjct:  211 MVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of CN189365 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = -3
Query:  412 ITNVGGAGDVRAVSIK-GSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVSNNVAPAGWSFGQTF 627
            + NV GAGDV  + +K G    W  MS NWG ++Q+ + L GQ+LSFKVT+ + G T+++  V PA W FG T+
Sbjct:  186 VMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
The following BLAST results are available for this feature:
BLAST of CN189365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP20_ARATH9.979e-1855.84Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP12_ARATH1.303e-1756.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXPA7_ARATH4.953e-1754.79Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP32_ORYSJ7.151e-1648.65Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.349e-1449.32Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH2.301e-1453.42Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP26_ORYSJ4.339e-1343.24Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ6.927e-1145.95Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189365 ID=CN189365; Name=CN189365; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTACTGAGAGAACTGATACATAATTTTATTCACCAAAGTCACAAG
ACATAACATTGATCATTAAAAAAAAAAATTAAAGACACATCCAGCAAAAG
GCTAATAATATTATAAGCACAGTTGCTCAGTTTATAGATGGCGGGTGGTA
CATGCCCTCCACTGCCAGCCAATTTCTGTCTCTGCCAATTTCAAAATTAG
AGCAGAGCAGAAACCACCGTACTAGAATACATAATCAAAATATAAAACGC
CAAAGGGCCATTTCAAAATAAGCCCTTTGTCATTTTGATACCAGATTCAA
CTAATTAACGCTATTACACTCATTATTTTATACTTGAAAATGTGAAAAAA
AAAAAAAAAACTGCTGGATTTTGGAGGCTGAGTTTCAACTTCAGGGAACT
TGCAGGCCACTGAAGGTTTGGCCAAAGGACCAGCCAGCTGGGGCAACATT
GTTAGAGACAACAGTGTGGCCATCACTTGTGGTGACCTTAAATGAGAGGC
TTTGGCCATTGAGGTAACTGTTACTTTGCCAGTTTTGACCCCAGTTCCTT
GACATGGGTTGCCAATCAGTTCTTGACCCTTTGATTGAAACAGCACGCAC
ATCACCAGCGCCTCCGACGTTTGTGATTAGGA
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