CN189362

Overview
NameCN189362
Unique NameCN189362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.133e-64
Identity = 111/176 (63.07%), Postives = 129/176 (73.30%), Query Frame = 1
Query:  106 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GG W  A ATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVNDPKWC PG  ++ VTATNFC          GGWCNPP+ HFDL+ PVF  IA+YRAG+VP++Y+RV C + GGIRFTINGH YFNLVLITNV GAGD+   S+KGS+TGW  +
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSL 206          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.653e-63
Identity = 112/179 (62.57%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  103 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV---NDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPM 627
            GGGGW +A ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C         CLPG+++VTATNFC          GGWCNPP+ HFD+SQPVFQ IA ++AG+VPV+Y+RV C ++GGIRFTINGHSYFNLVL+TNVGGAGDVHAV++K  R+  WQ +
Sbjct:   60 GGGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQAL 238          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.653e-63
Identity = 109/176 (61.93%), Postives = 130/176 (73.86%), Query Frame = 1
Query:  106 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GG W NA ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+EIKC +DP+WC+PG  +I+VTATNFC          GGWCNPP++HFDL+ P+F  I  YRAG+VPV+Y+RVPC + GGIRFT+NG  YFNLVL+TNV GAGD++ VS+KGS+T W  M
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRM 208          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.525e-63
Identity = 111/181 (61.33%), Postives = 132/181 (72.93%), Query Frame = 1
Query:   97 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            A GGG W +A ATFY              YGNLYSQGYG N AALSTALFN+G SCG+C+EIKCVN P  +WC PG+  I++TATNFC          GGWCNPP+ HFDL+ P+F HIA+YRAG+VPV+Y+RVPC ++GG+RFTING  YFNLVLITNV GAGD+   S+KG+ TGW PM
Sbjct:   30 AYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPM 210          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62
Identity = 114/181 (62.98%), Postives = 134/181 (74.03%), Query Frame = 1
Query:   94 HANGG--GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            H  GG  G WINA ATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ CVNDP+WC+ G +I+VTATNFC          GG C+PP  HFDLSQP+++ IA Y++G++PV Y+RV C R GGIRFTINGHSYFNLVL+TNVGGAGDVH+VS+KGSRT WQ M
Sbjct:   29 HHPGGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLM 201          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.483e-61
Identity = 106/179 (59.22%), Postives = 133/179 (74.30%), Query Frame = 1
Query:   94 HANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPM 627
            +++  GGW    ATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++C +DP+WC+PG+I+V+ATNFC          GGWCNPP +HFDL++P F  IAQYRAG+VPVA++RVPC + GGIRFTING+ YF+LVLITNVGGAGD+ AVS+KGS+T  WQ M
Sbjct:   25 NSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSM 203          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 5.531e-61
Identity = 105/176 (59.66%), Postives = 126/176 (71.59%), Query Frame = 1
Query:  106 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GGGW  A ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  G+  I +TATNFC          GGWCNPP+ HFDL+ P+F  IA+YRAG+VPV+++RVPC +RGGIRFTING  YFNLVL+TNV GAG++  + +KG+ T W  M
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTM 203          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 108/177 (61.02%), Postives = 125/177 (70.62%), Query Frame = 1
Query:   97 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            A G  GW +  ATFY              YGNLYS GYGT+TAALSTALFNNG SCG+C+E++C      CL GT+ VTATN C          GGWCNPP+ HFD+++P F  IAQ RAGVVPV Y+RV C ++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ M
Sbjct:   21 AGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAM 196          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.383e-58
Identity = 106/184 (57.61%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  103 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKW-CLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG------WQPM 627
            G G W    ATFY              YGNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  D +  CLPG  T+ VTATNFC          GGWCNPP++HFDL++P F  IA++ AG+VPV+++RV C R+GG+RFT+NGH+YFNLVL+TNVGGAGDV ++++KGS +G      WQPM
Sbjct:   24 GLGQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPM 207          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 3.839e-54
Identity = 95/171 (55.56%), Postives = 118/171 (69.01%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            W +ARATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY+I CV+DP+WCLPGTI +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV Y+R+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITM 223          
The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXP16_ARATH3.133e-6463.07Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA5_ORYSJ2.653e-6362.57Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH2.653e-6361.93Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ4.525e-6361.33Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH6.534e-6262.98Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA2_ARATH2.483e-6159.22Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA6_ARATH5.531e-6159.66Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP11_ORYSJ1.043e-5961.02Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ4.383e-5857.61Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH3.839e-5455.56Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bp
AGGTTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGC
TGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTA
ATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTTTCTATGGTGGTGGC
GATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAG
CCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACA
ACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCC
AAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCC
ACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGC
AGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATAC
AGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAG
GGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGT
TGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAA
GGGTCTAGAACTGGCTGGCAGCCCATG
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