CN189362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13 Identity = 54/182 (29.67%), Postives = 81/182 (44.51%), Query Frame = 1 Query: 103 GGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG-GIRFTI--NGHSYFNLVLITNVGGAGDVHAVSIKGSR 609 GGGGW+NARAT+Y G N+ + T+ + LF +G CGSCY+I+CV P LP T+++T N+ HFDLS F +A+ AG++ + ++RVPC G + F + + + +L+ G GDV V + SR Sbjct: 88 GGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSL--------------YHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESR 255
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13 Identity = 53/176 (30.11%), Postives = 77/176 (43.75%), Query Frame = 1 Query: 112 GWINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS 606 GW AT+Y Y G++ + + AA S +++ +G CGSCY++KC +P C + V T+ C GG C HFDLS F +A+ AG +PV Y RVPC +G R + Y+ VL+ + G GD+ AV + S Sbjct: 37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQS 202
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12 Identity = 55/185 (29.73%), Postives = 81/185 (43.78%), Query Frame = 1 Query: 115 WINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYKRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPM 627 W N AT+Y Y G ++ + + AA S +++ +GL CGSCY++KC + C + V T+ C GG C HFDLS F +A Q R AGV+ + Y RVPC GG++ T + + + VL+ G GD+ V + G+ W M Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQM 210
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12 Identity = 55/183 (30.05%), Postives = 79/183 (43.17%), Query Frame = 1 Query: 112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627 GW A AT+Y Y Q + + AA S +L+ G CG+CYE+KC + C V T+ C GG C HFD+S +A+ AG++ V Y+RVPC G I F ++ + ++ VLI G GD++AV + + GW PM Sbjct: 63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDEC---------PGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPM 235
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12 Identity = 58/186 (31.18%), Postives = 80/186 (43.01%), Query Frame = 1 Query: 115 WINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYKRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPM 627 W N AT+Y Y Q + + AA S +++ +GL CGSCY++KC + C + V T+ C GG C HFDLS F +A Q R AGV+ + Y RVPC GG+ T + SYF VL+ G GD+ + + G+ W PM Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPM 210 The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bpback to top |