CN189362

Overview
NameCN189362
Unique NameCN189362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 54/182 (29.67%), Postives = 81/182 (44.51%), Query Frame = 1
Query:  103 GGGGWINARATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWC-LPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG-GIRFTI--NGHSYFNLVLITNVGGAGDVHAVSIKGSR 609
            GGGGW+NARAT+Y               G  N+    +   T+  +  LF +G  CGSCY+I+CV  P    LP T+++T  N+                    HFDLS   F  +A+         AG++ + ++RVPC   G  + F +    +  +  +L+    G GDV  V +  SR
Sbjct:   88 GGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVSL--------------YHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESR 255          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 53/176 (30.11%), Postives = 77/176 (43.75%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS 606
            GW    AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +  S
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQS 202          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 55/185 (29.73%), Postives = 81/185 (43.78%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYKRVPCGRRGGIRFT----INGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPM 627
            W N  AT+Y              Y G ++   + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A      Q R AGV+ + Y RVPC   GG++ T    +  +  +  VL+    G GD+  V +   G+   W  M
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQM 210          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 55/183 (30.05%), Postives = 79/183 (43.17%), Query Frame = 1
Query:  112 GWINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQ-------YRAGVVPVAYKRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPM 627
            GW  A AT+Y              Y     Q  + +  AA S +L+  G  CG+CYE+KC  +   C      V  T+ C          GG C     HFD+S      +A+         AG++ V Y+RVPC   G  I F ++   + ++  VLI    G GD++AV +  +  GW PM
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDEC---------PGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPM 235          
BLAST of CN189362 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 58/186 (31.18%), Postives = 80/186 (43.01%), Query Frame = 1
Query:  115 WINARATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIA------QYR-AGVVPVAYKRVPCGRRGGIRFTI-----NGHSYFNLVLITNVGGAGDVHAVSI--KGSRTGWQPM 627
            W N  AT+Y              Y     Q  + +  AA S +++ +GL CGSCY++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A      Q R AGV+ + Y RVPC   GG+  T      +  SYF  VL+    G GD+  + +   G+   W PM
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPM 210          
The following BLAST results are available for this feature:
BLAST of CN189362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
EXPB7_ORYSJ3.288e-1329.67Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB14_ORYSJ3.288e-1330.11Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ2.131e-1229.73Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ2.131e-1230.05Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ6.201e-1231.18Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189362 ID=CN189362; Name=CN189362; organism=Citrus sinensis; type=EST; length=627bp
AGGTTACTCTGCTTCTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGC
TGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTA
ATGGAGGCGGTGGGTGGATCAATGCTCGTGCCACTTTCTATGGTGGTGGC
GATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAG
CCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACA
ACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATGACCCC
AAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTTTGCCC
ACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGC
AGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATAC
AGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAG
GGGAGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGT
TGATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAA
GGGTCTAGAACTGGCTGGCAGCCCATG
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