CN189355

Overview
NameCN189355
Unique NameCN189355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4427 contig Csv1_Contig4427:10..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: VAT1L_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Mus musculus GN=Vat1l PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 59/180 (32.78%), Postives = 94/180 (52.22%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGSEEKLAV 636
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T ++ +F  ++L  G S LVH    G+G    Q+      V VF TA + +  A+
Sbjct:   40 MRAVVLAGFGGLNKLRLSRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYTMLFEIANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI 219          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: VAT1L_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog-like OS=Homo sapiens GN=VAT1L PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQM-GKCQGVRVFVTAGSEEKLAV 636
            M+A+V+   G    L+L     P+ +D E+ I+V+A  LN  D + R+G+   P      PG ECSG + ++G +V  +++GD+V A +    +AE V  P   V  +P  +S  +AAAFP    T +  +F  ++L  G S LVH    G+G    Q+      V VF TA + +  A+
Sbjct:   42 MRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI 221          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QOR_PSEAE (Quinone oxidoreductase OS=Pseudomonas aeruginosa GN=qor PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 62/185 (33.51%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  103 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGA 654
            K I     G PEVL+ ++ +  +    EV ++  A  LN  DT  R G YP P G     G E +G + +VG  V+R+KVGD+V    G  G Y+E   +   +++ +P G+  + AAA      T    +  T  L  GE+ L H  + G+G FA Q  K  GV++  T  S EK  + +  GA
Sbjct:    3 KRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAP-GLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGA 186          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QOR_YEAST (Probable quinone oxidoreductase OS=Saccharomyces cerevisiae GN=ZTA1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 58/190 (30.53%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  103 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   PY  G E SGT+++ GK V+ ++VGDQV A +    +A+   + + G V+ +P G S ++   +      V + +  T+   H+  G+  L+   + G+G    Q+ K +G      A ++EKL + K+ GA+
Sbjct:   10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYVLGREASGTVVAKGKGVTNFEVGDQV-AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE 195          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  142 LQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC------------------ALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGA 654
            L+ +E E PQ +   EVL+K++A +LN  D +  KG YP P      PG + +G I  VG++V  ++ GD V                   + LGG   G + +   +PA  ++  P  +S ++ A  P  A T W+ +F +    + PG + LV  G+ G+ TFA+Q     G  V VT+ S+EKL   K LGA
Sbjct:   17 LKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVL-GTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGA 210          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 66/199 (33.17%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-YPGLECSGTILSVGKNVSRWKVGDQVCALLGG---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADV 660
            MKA V +  G  +VL+L+  +  P+IK+D+VLIKV A ALN  D  +R+G +       P  PG + +G ++ VG  V   K GD+V A +           G  AE  AV    +   P  +    AA  P +A        + +  S G+S LV  G+ G+G+  IQ+ K   G        S EKL + + LGAD+
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLP-LAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADL 275          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 56/182 (30.77%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAV 636
            ++ +V+T  G  + ++LQ      P     ++ +++ A  LN AD + R+G Y         PG+E +G +++VG+ VS  K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA + +  A+
Sbjct:   48 LRCLVLTGFGGYDKVKLQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASASKHEAL 229          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QOR_SALTY (Quinone oxidoreductase OS=Salmonella typhimurium GN=qor PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  127 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGA 654
            G PEVLQ  E    +  + E+ ++ +A  +N  DT  R G YPPP   +   G E +G +  VG  V   +VGD+V  A    G Y+    V A +   +P  +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T GS +K     D GA
Sbjct:   11 GGPEVLQTVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPPPSLPAGL-GTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALDAGA 186          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 62/195 (31.79%), Postives = 100/195 (51.28%), Query Frame = 1
Query:   76 STLESEGTMKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLG 651
            S   S   ++ +V+T  G  + ++LQ      P     ++ ++V A  LN AD + R+G Y         PG+E +G +++VG+ V   K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA S  K  V K+ G
Sbjct:   53 SASASAPPLRCLVLTGFGGYDKVKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTPGMEGAGVVVAVGEGVGDRKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTA-SASKHEVLKENG 246          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTU (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  115 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIE 1612          
The following BLAST results are available for this feature:
BLAST of CN189355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
VAT1L_MOUSE8.103e-2132.78Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
VAT1L_HUMAN3.079e-2032.78Synaptic vesicle membrane protein VAT-1 homolog-li... [more]
QOR_PSEAE1.528e-1933.51Quinone oxidoreductase OS=Pseudomonas aeruginosa G... [more]
QOR_YEAST2.882e-1830.53Probable quinone oxidoreductase OS=Saccharomyces c... [more]
YGD6_SCHPO4.916e-1832.82Zinc-type alcohol dehydrogenase-like protein C1773... [more]
QORL_ARATH8.385e-1833.17Quinone oxidoreductase-like protein At1g23740, chl... [more]
VAT1_HUMAN1.095e-1730.77Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
QOR_SALTY1.095e-1733.33Quinone oxidoreductase OS=Salmonella typhimurium G... [more]
VAT1_MOUSE1.868e-1731.79Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
PHAS_MYCTU2.440e-1727.07Phthioceranic/hydroxyphthioceranic acid synthase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189355 ID=CN189355; Name=CN189355; organism=Citrus sinensis; type=EST; length=665bp
CCGTAAAGGGCAAATGGGAAAAACATCATCATTTGCATTAGCTTTGTATA
AATAAATATTTTGGAATCATTTAATTCTACTCTGGAAAGTGAAGGCACAA
TGAAGGCAATAGTGATAACTCAACCCGGTAGCCCAGAAGTGCTGCAGTTG
CAAGAAGTAGAAGACCCTCAAATCAAAGACGACGAAGTGTTGATCAAAGT
CGAAGCTACTGCCCTGAACCGGGCCGACACTCTTCAACGAAAAGGCTCCT
ACCCTCCACCCAAAGGCGCCAGCCCTTACCCGGGTCTCGAATGTTCCGGA
ACCATCCTGTCCGTTGGTAAAAACGTCTCTAGATGGAAAGTCGGCGACCA
GGTGTGTGCTCTGCTTGGTGGAGGAGGGTATGCTGAGAAAGTGGCTGTTC
CAGCTGGACAAGTTCTTCCCGTTCCATCTGGTGTCTCACTCAAAGATGCT
GCTGCGTTTCCGGAGGTGGCTTGCACTGTTTGGTCAACGGTTTTCATGAC
CAGTCACCTATCCCCAGGGGAGTCATTTCTGGTTCATGGGGGCTCTAGTG
GAATTGGTACATTTGCGATTCAGATGGGAAAATGCCAAGGAGTGAGAGTC
TTTGTTACAGCAGGAAGTGAGGAAAAGCTGGCTGTTTGCAAGGATCTTGG
TGCGGATGTGTGCAT
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