CN189355

Overview
NameCN189355
Unique NameCN189355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4427 contig Csv1_Contig4427:10..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  115 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIE 1612          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBP (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  115 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIE 1612          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBO (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis GN=pks2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 49/181 (27.07%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  115 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG+ ++  + +++G +
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIE 1612          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QOR_ECOLI (Quinone oxidoreductase OS=Escherichia coli (strain K12) GN=qor PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 57/177 (32.20%), Postives = 83/177 (46.89%), Query Frame = 1
Query:  127 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGA 654
            G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP   S   G E +G +  VG  V   K GD+V  A    G Y+    + A +   +P+ +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G+ +K       GA
Sbjct:   11 GGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGL-GTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 186          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 74/220 (33.64%), Postives = 99/220 (45.00%), Query Frame = 1
Query:   67 SFNSTLESEGTMKAIVITQPGSPEVLQLQEVEDPQI--KDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP--------------GLECSGTILSVGKNVSRWKVGDQVCALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES----FLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            SF+ +      M A VI + G  +VL+  +     I    +EV++KV A  LN  D   R G           P              G + SG I+  G +V  +K GDQV A +     G  AE V V   +V   P  +   +AA+ P VA T WS +  T  L+   S     L+ GGS G+GTFAIQM K  G  V VT  S+    + +DLGAD
Sbjct:   18 SFSFSAARRTVMPAWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIPPWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVKAWGAHVTVTC-SQNAERLVRDLGAD 236          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 61/187 (32.62%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  127 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL---SPGE--SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            G  + L+  EV  P  K DE+L+K+EA  LN  D   +KG   P  P+     PG + +G ++  G  V+R+K GD+V A+L    GG  AE         +  P  VS  + AA P  A T    +   +++     GE  + L+   S G+G +A+Q+ K     V  T G+   L   K LGAD
Sbjct:   16 GGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGA-RNLDFVKGLGAD 201          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: VAT1_TORCA (Synaptic vesicle membrane protein VAT-1 OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   85 ESEGTMKAIVITQPGSPEVLQLQEVED-PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL-LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLG 651
            E E +  AIV+   G  + ++++  +  P +K DE+L++V+A  LN +D L R+G++    G     G EC+G + ++G  V   KVGD++  L + GG + E V     +   +P G+S ++AAA        +  ++  ++L P +S L+H  + G+G  A Q+ K    V +F TA S  K    K+ G
Sbjct:   22 EPEISYNAIVLNGVGGYDKVKVEVKKGVPTLKSDEILVRVQACGLNFSDLLVRQGAF----GKHHSLGTECAGVVEAIGDLVIDRKVGDKIIMLNIDGGLWTELVVTTVNRTFLMPDGMSFQEAAAISVNYTAAYVMIYDFANLRPSQSILIHMAAGGVGIAATQLCKLVHDVTIFGTA-SPSKHETIKENG 208          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 66/215 (30.70%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----------------LLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADV 660
            MKA V+ +    + L+++EVE P++++ EVL+K+EA  +   D     G +P        PG E  G ++ V K V   KVGD+V        C                 L GG    GGYAE    PA  V  +P  +   + A       T +  +   S   PGE   ++ G  G+G  A+Q  K  G+ V     S+EK  + KDLGAD+
Sbjct:    1 MKAAVVNE--FKKALEIKEVERPKLEEGEVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLCPHQLNGGYSVDGGYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKAL-KVSGARPGEWVAIY-GIGGLGHIALQYAKAMGLNVVAVDISDEKSKLAKDLGADI 211          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 68/215 (31.63%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADV 660
            MKA V+ Q   P  LQ++EVE P+I   EVL++++A  +   D     G +P        PG E  G I  VG  V+  KVGD+V        C      L G                GGYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+G  A+Q  K  G+ V      +EKL + K LGAD+
Sbjct:    1 MKAAVVEQFKKP--LQVKEVEKPKISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVDLGDEKLELAKQLGADL 211          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: MCAS_MYCBO (Mycocerosic acid synthase OS=Mycobacterium bovis GN=mas PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 46/198 (23.23%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   64 ESFNSTLESEGTMKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGAD 657
            E   + L+ +     + + +PG  + L+    +       ++ + V  +++N AD L   G +P      P  G++  G + +VG+ V+  +VGD+V     GG +   +   A   + +P G++ + A        T W  +   + +  G+  L+H  + G+G  AI + + +G  +F TAG+  K A+ +D+G +
Sbjct: 1408 ERRTAVLDPDHDGMRVQVRRPGDLQTLEFVASDRVPPGPGQIEVAVSMSSINFADVLIAFGRFPIIDDREPQLGMDFVGVVTAVGEGVTGHQVGDRVGGFSEGGCWRTFLTCDANLAVTLPPGLTDEQAITAATAHATAWYGLNDLAQIKAGDKVLIHSATGGVGQAAISIARAKGAEIFATAGNPAKRAMLRDMGVE 1605          
The following BLAST results are available for this feature:
BLAST of CN189355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PHAS_MYCTA2.440e-1727.07Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBP2.440e-1727.07Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBO2.440e-1727.07Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
QOR_ECOLI4.162e-1732.20Quinone oxidoreductase OS=Escherichia coli (strain... [more]
RT4I1_DANRE9.271e-1733.64Reticulon-4-interacting protein 1 homolog, mitocho... [more]
QORH_SPIOL1.211e-1632.62Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
VAT1_TORCA3.523e-1630.73Synaptic vesicle membrane protein VAT-1 OS=Torpedo... [more]
ADH2_BACST4.601e-1630.70Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_BACST6.009e-1631.63Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
MCAS_MYCBO1.025e-1523.23Mycocerosic acid synthase OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189355 ID=CN189355; Name=CN189355; organism=Citrus sinensis; type=EST; length=665bp
CCGTAAAGGGCAAATGGGAAAAACATCATCATTTGCATTAGCTTTGTATA
AATAAATATTTTGGAATCATTTAATTCTACTCTGGAAAGTGAAGGCACAA
TGAAGGCAATAGTGATAACTCAACCCGGTAGCCCAGAAGTGCTGCAGTTG
CAAGAAGTAGAAGACCCTCAAATCAAAGACGACGAAGTGTTGATCAAAGT
CGAAGCTACTGCCCTGAACCGGGCCGACACTCTTCAACGAAAAGGCTCCT
ACCCTCCACCCAAAGGCGCCAGCCCTTACCCGGGTCTCGAATGTTCCGGA
ACCATCCTGTCCGTTGGTAAAAACGTCTCTAGATGGAAAGTCGGCGACCA
GGTGTGTGCTCTGCTTGGTGGAGGAGGGTATGCTGAGAAAGTGGCTGTTC
CAGCTGGACAAGTTCTTCCCGTTCCATCTGGTGTCTCACTCAAAGATGCT
GCTGCGTTTCCGGAGGTGGCTTGCACTGTTTGGTCAACGGTTTTCATGAC
CAGTCACCTATCCCCAGGGGAGTCATTTCTGGTTCATGGGGGCTCTAGTG
GAATTGGTACATTTGCGATTCAGATGGGAAAATGCCAAGGAGTGAGAGTC
TTTGTTACAGCAGGAAGTGAGGAAAAGCTGGCTGTTTGCAAGGATCTTGG
TGCGGATGTGTGCAT
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