CN189355

Overview
NameCN189355
Unique NameCN189355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4427 contig Csv1_Contig4427:10..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: RT4I1_DICDI (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 50/176 (28.41%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  100 MKAIVITQPGSPEVLQLQEVED----PQIKDDEVLIKVEATALNRADTLQRKG---SYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCAL---LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF----MTSHLSPGESFLVHGGSSGIGTFAIQMGK 582
            MK I++   G  E L L E +     P+    +VLIK+ +T++N  D + RKG   S    K   P   G ECSG I+ +G +V  +++GDQV +       G + E + V   ++   P  ++ + +A+ P  + T W+ ++        ++     LV+GG+  +G F +Q+ K
Sbjct:    1 MKGILLN--GYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDSVWDYEIGDQVWSASPPFSMGSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLK 174          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: MECR_HUMAN (Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=MECR PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 48/168 (28.57%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  100 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVR 597
            ++A+V    G P +V++L+ +E   ++  +V +K+ A  +N +D    +G+Y          G E    +++VG NV+  K GD V     G G     AV + + L  VPS + L+ AA      CT +  +     L PG+S + +  +SG+G   IQ+    G+R
Sbjct:   43 VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLR 210          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: ZDH1_STAES (Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 49/174 (28.16%), Postives = 80/174 (45.98%), Query Frame = 1
Query:  166 PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC---ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP------GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADV 660
            P     E+L+KV++ ++N  DT QR     P        G +  G I  +G  VS ++ GD V    +    G   E   +    V   P+ +  + AA+ P    T + T+F    +S       G+S L+  G+ G+G+ A Q+ K  G++V  TA  E+ +    ++GADV
Sbjct:   26 PHPSGHELLVKVQSISVNPVDTKQRT---MPVDKVPRVLGFDAVGVIEKIGDQVSMFQEGDVVFYSGSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFYGLKVITTASREDTIKWSVNMGADV 196          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PKS5_DICDI (Probable polyketide synthase 5 OS=Dictyostelium discoideum GN=pks5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 50/169 (29.59%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  130 SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAGSEE 624
            SP +    + +  +++D++V +K  AT +N  D L   G        +P  G E SG I  VG NV  +KVGD V   L     +  + V   ++   PS +S  +AA+ P    T + ++F     ++   ES L+H GS   G    ++ K +G +  +FVT  S+E
Sbjct: 1803 SPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFG-LSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDE 1970          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: PKS3_DICDI (Probable polyketide synthase 3 OS=Dictyostelium discoideum GN=pks3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  184 EVLIKVEATALNRADTLQRKGSYPPPKGA-------SPYPGLECSGTILSVGKN-VSRWKVGDQVCALLGGGGY---AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG--VRVFVTAGSEEKLAVCKD 645
            EV +++++ ALN  D L   GS PP            P  G + SG I  V KN  S +KVGDQV     G  Y   + K  + +G +   P+ +S + A+  P V  T   +++   +L   ES L+H  S G+G  ++ + K +G    +F+T GS EK    +D
Sbjct: 1715 EVQVEIKSFALNYKDYLTYIGSVPPEMVNHKTGDINDPEFGSDFSGVITRVSKNNCSEFKVGDQVY----GTAYNTASSKSIIDSGSIYFKPNNLSHEQASTIPVVYSTSLHSIYNIGNLKNYESILIHSASGGVGLSSLNILKWKGHCSYIFLTVGSPEKEKYLRD 1877          
BLAST of CN189355 vs. ExPASy Swiss-Prot
Match: ADH1_YEAST (Alcohol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=ADH1 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 53/216 (24.54%), Postives = 91/216 (42.13%), Query Frame = 1
Query:   97 TMKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGD--------------QVCAL----------LGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADV 660
            T K ++  +  S   L+ +++  P+ K +E+LI V+ + +   D     G +P P       G E +G ++ +G+NV  WK+GD              + C L          L G    G + +     A Q   +P G  L   A       TV+  +  +++L  G    + G + G+G+ A+Q  K  G RV    G E K  + + +G +V
Sbjct:    6 TQKGVIFYE--SHGKLEHKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEV 218          
The following BLAST results are available for this feature:
BLAST of CN189355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RT4I1_DICDI5.820e-1128.41Reticulon-4-interacting protein 1 homolog, mitocho... [more]
MECR_HUMAN5.820e-1128.57Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo... [more]
ZDH1_STAES7.602e-1128.16Zinc-type alcohol dehydrogenase-like protein SE_17... [more]
PKS5_DICDI7.602e-1129.59Probable polyketide synthase 5 OS=Dictyostelium di... [more]
PKS3_DICDI9.928e-1131.74Probable polyketide synthase 3 OS=Dictyostelium di... [more]
ADH1_YEAST9.928e-1124.54Alcohol dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189355 ID=CN189355; Name=CN189355; organism=Citrus sinensis; type=EST; length=665bp
CCGTAAAGGGCAAATGGGAAAAACATCATCATTTGCATTAGCTTTGTATA
AATAAATATTTTGGAATCATTTAATTCTACTCTGGAAAGTGAAGGCACAA
TGAAGGCAATAGTGATAACTCAACCCGGTAGCCCAGAAGTGCTGCAGTTG
CAAGAAGTAGAAGACCCTCAAATCAAAGACGACGAAGTGTTGATCAAAGT
CGAAGCTACTGCCCTGAACCGGGCCGACACTCTTCAACGAAAAGGCTCCT
ACCCTCCACCCAAAGGCGCCAGCCCTTACCCGGGTCTCGAATGTTCCGGA
ACCATCCTGTCCGTTGGTAAAAACGTCTCTAGATGGAAAGTCGGCGACCA
GGTGTGTGCTCTGCTTGGTGGAGGAGGGTATGCTGAGAAAGTGGCTGTTC
CAGCTGGACAAGTTCTTCCCGTTCCATCTGGTGTCTCACTCAAAGATGCT
GCTGCGTTTCCGGAGGTGGCTTGCACTGTTTGGTCAACGGTTTTCATGAC
CAGTCACCTATCCCCAGGGGAGTCATTTCTGGTTCATGGGGGCTCTAGTG
GAATTGGTACATTTGCGATTCAGATGGGAAAATGCCAAGGAGTGAGAGTC
TTTGTTACAGCAGGAAGTGAGGAAAAGCTGGCTGTTTGCAAGGATCTTGG
TGCGGATGTGTGCAT
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