CN189349

Overview
NameCN189349
Unique NameCN189349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            FVGD+ SSIFDA AGI+L+  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            FVG+  SS+FDA AGI L+  FVKL++WYDNE+GYS RVVDL+VH +K
Sbjct:  285 FVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  303 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 443
            F GDS SS FDA+ GI+L+  FVKLVSWYDNEWGYS RV DL+ +++
Sbjct:  286 FTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
The following BLAST results are available for this feature:
BLAST of CN189349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
G3PT_DANRE1.575e-1269.57Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_RHIRA1.575e-1266.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P1_SHIFL2.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY2.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI2.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF32.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI2.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.057e-1268.75Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_PHARH2.687e-1265.96Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189349 ID=CN189349; Name=CN189349; organism=Citrus sinensis; type=EST; length=443bp
GACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCA
ATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCT
TCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTA
AGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCT
ACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTTAGC
ACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTC
TTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTC
ATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATAC
CAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAA
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