CN189349

Overview
NameCN189349
Unique NameCN189349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:77..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  300 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 437
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  300 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 437
            G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H++K
Sbjct:  287 GNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = -1
Query:  309 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 443
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAY 330          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  ++K
Sbjct:  283 FLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 31/46 (67.39%), Postives = 42/46 (91.30%), Query Frame = -1
Query:  300 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 437
            G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ +++K
Sbjct:  287 GNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+ +M
Sbjct:  382 FNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F+GD+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  358 FLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 403          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  297 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 443
            F+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H++K+
Sbjct:  284 FLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  ++K
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.430e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  ++K
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
The following BLAST results are available for this feature:
BLAST of CN189349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
G3P_SORMA1.425e-1373.91Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_CRYPA1.425e-1373.91Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_SCHPO1.425e-1375.56Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLULA1.425e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_CLAPU1.861e-1367.39Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3PT_RAT1.861e-1378.26Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN1.861e-1373.91Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_ZYGRO2.430e-1369.39Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P3_KLUMA2.430e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA2.430e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189349 ID=CN189349; Name=CN189349; organism=Citrus sinensis; type=EST; length=443bp
GACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCA
ATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCT
TCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTA
AGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCT
ACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTTAGC
ACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTC
TTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTC
ATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATAC
CAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAA
back to top