CN189349

Overview
NameCN189349
Unique NameCN189349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:77..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  300 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 440
            +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  286 LGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  285 FLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  345 FLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  300 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 437
            G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  287 GNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  300 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 443
            F+G + SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI +++K
Sbjct:  285 FLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  300 DSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 434
            D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV++SK
Sbjct:  287 DPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  303 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 443
            F+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H++
Sbjct:  283 FLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CN189349 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -1
Query:  306 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 443
            F  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of CN189349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
G3P_TRIAT3.174e-1368.09Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_DEBHA3.174e-1370.83Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P2_DROPS3.174e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME3.174e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3PT_BOVIN4.145e-1371.74Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PODAN5.413e-1369.57Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_CRYCU5.413e-1366.67Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_TRIKO5.413e-1375.56Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_KLULA5.413e-1368.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_DROME5.413e-1369.57Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189349 ID=CN189349; Name=CN189349; organism=Citrus sinensis; type=EST; length=443bp
GACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCA
ATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCT
TCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTA
AGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCT
ACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTTAGC
ACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTC
TTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTC
ATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATAC
CAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAA
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