CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHP+N LNERTLKGTFFGNYK R+D+PSVVEKYMNKE+ELEKFITH VPFSEINKAF+ ML GE +RCIIRM+
Sbjct:  294 VLVGVPHKDAVFKTHPVNFLNERTLKGTFFGNYKTRTDIPSVVEKYMNKELELEKFITHKVPFSEINKAFEYMLKGEGLRCIIRME 379          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.827e-36
Identity = 69/85 (81.18%), Postives = 77/85 (90.59%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            VLVGVP+K+  FKTHP+N LNERTLKGTFFGNYKPRSD+P VVEKYMNKE+ELEKFITH +PF+EINKAFDLML GE +RCII M
Sbjct:  294 VLVGVPHKEAVFKTHPLNFLNERTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITM 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.827e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KE+E+EKFITH+VPF+EINKAFDLM  GE IRCIIRM+
Sbjct:  293 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLMAKGEGIRCIIRME 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGN+KPR+DLP+VVE YM KE+E+EKFITH+VPFSEINKAFDLM  GE IRCIIRM+
Sbjct:  293 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKAFDLMAKGEGIRCIIRME 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.165e-35
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGN+KPR+DLP+VVE YM KE+E+EKFITH+VPFSEIN AFDLM  GE IRCIIRMD
Sbjct:  293 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINTAFDLMAKGEGIRCIIRMD 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.594e-35
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  F THPMN LNERTLKGTFFGNYKPR+D+PSVVEKYMNKE+E++KFITH +PFS+INKAFD ML GE IRCII M+
Sbjct:  294 VLVGVPHKDAVFTTHPMNFLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITME 379          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.594e-35
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KE+E+EKFITH+VPFSEIN AFDLM  GE IRCIIRM+
Sbjct:  293 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRME 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.594e-35
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KE+E+EKFITH+VPFSEIN AFDLM  GE IRCIIRM+
Sbjct:  293 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRME 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.893e-34
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVGVP+K+  FKTHPMN LNE+TLKGTFFGNYKPR+DLP VVE YM KE++LEKFITH+VPFS+IN AFDLML GE +RCI R D
Sbjct:  293 VLVGVPHKEAVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPEVVEMYMRKELDLEKFITHSVPFSQINTAFDLMLKGEGLRCITRTD 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.513e-30
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = -1
Query:  363 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLM 581
            VLVGVP+KD  FKTHPMN LNERTLKGTFFGNYKPR+DLP+VVE YM KE+E+EKFITH+VPF+EINKAFDLM
Sbjct:  220 VLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLM 292          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADH_MALDO5.227e-3681.40Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH2_SOLLC6.827e-3681.18Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_MAIZE6.827e-3681.40Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH1_PENAM8.917e-3681.40Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH1_HORVU1.165e-3581.40Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADH_FRAAN2.594e-3579.07Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADH1_ORYSJ2.594e-3581.40Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI2.594e-3581.40Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH3_HORVU4.893e-3476.74Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
ADH1_ZEALU2.513e-3083.56Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
back to top