CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.286e-30
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = -1
Query:  324 GVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 572
            GV +K+  FKTHPMN LNERTL+GTFFGNYKPR+ LP VV+ YM KE+EL+KFITH++PFS+IN AFDLML GE +RC+IR +
Sbjct:  290 GVAHKEAVFKTHPMNFLNERTLRGTFFGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTAFDLMLRGEGLRCVIRSE 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V +GVP        H    L+ ++LKGT FG +KP+SDLPS+++KYMNKE+ +++FITH + F EINKAF LM  G+ +RC++ M
Sbjct:  295 VTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 379          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+NKE+++++++TH++  ++INKAFDL+  G  +RC++  D
Sbjct:  295 VIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVLATD 380          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+NKE+++++++TH++  ++INKAFDL+  G  +RC++  D
Sbjct:  295 VIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVLATD 380          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 36/85 (42.35%), Postives = 61/85 (71.76%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V+VGV    +   T P  L+  RT KGT FG +K    +P +V +YM+K++++++F+TH++PF +IN+AFDLM +G+SIR ++++
Sbjct:  290 VVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLMHAGKSIRTVVKL 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.523e-16
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGV        T P  L+  R  KGT FG +K R+ +P +VEKYMNKE++++++ITH +   EINKAFDL+  G  +RC++
Sbjct:  293 VIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.025e-15
Identity = 36/84 (42.86%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  330 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 581
            V+VGV        T P  L+  RT KGT FG +K    +P +V++YM+K+M++++F+TH +PF +IN+AF+LM +G+SIR +++
Sbjct:  289 VIVGVAAAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFELMHAGKSIRSVLK 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.025e-15
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GV        T P  L+  RT KGT FG YK    +P +VE+YMNK++++++F+TH +PF +I++ FDLM +G+SIR ++
Sbjct:  291 VIIGVAAAGQEISTRPFQLVTGRTWKGTAFGGYKSVESVPKLVEEYMNKKVKVDEFVTHTLPFEKIHEGFDLMGAGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.025e-15
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            +++G+  K         +LL  RT+ GT FG  KP+ D+P +V++Y+ KE+ LE  ITH + F EINKAF L+  G SIRCII MD
Sbjct:  300 IVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLAEGNSIRCIIWMD 385          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGV        T P  L+  R  KGT FG +K RS +P +VEKY+ KE++++++ITH +   EINKAFDL+  G+ +RC++
Sbjct:  292 VIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKAFDLLHEGQCLRCVL 374          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADH2_HORVU4.286e-3069.88Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADHL6_ARATH9.904e-1949.41Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADHX_ORYSJ2.065e-1643.02Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI2.065e-1643.02Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_BOVIN3.523e-1642.35Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_ARATH3.523e-1645.78Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_UROHA1.025e-1542.86Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHL_GADMO1.025e-1543.37Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHL2_ARATH1.025e-1546.51Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADHX_PEA1.339e-1544.58Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
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