CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GV        T P  L+  R  K T FG +K    +P +VE YMNK++++++F+TH +PF  IN+ FDLM +G+SIRC++
Sbjct:  291 VIIGVAGAGQEIATRPFQLVTGRVWKATAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEGFDLMHAGKSIRCVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.748e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGV    +   T P  L+  R  KGT FG +K R  +P +V+ YMNK++ L++F++H + F +IN+AFDLM  GESIR ++
Sbjct:  292 VIVGVAAHGEEISTRPFQLVTGRVWKGTAFGGFKSRDSVPKLVDDYMNKKLLLDEFVSHKLSFKKINEAFDLMHKGESIRAVL 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 1.748e-15
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V+VGV    +   T P  L+  RT KGT FG +K    +P +V +YM+K++++++F+TH + F EINKAF+LM SG+SIR ++++
Sbjct:  290 VVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.895e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  330 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 581
            V++GV        T P  L+  R  KG+ FG ++  SD+P +VE Y+ K++ +++FITH +P S+IN+AFDLM  GESIR II+
Sbjct:  295 VVIGVAGAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGESIRSIIK 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 34/85 (40.00%), Postives = 60/85 (70.59%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V+VGV    +   T P  L+  RT KGT FG +K    +P +V +YM+K++++++F+TH++ F +IN+AF+LM +G+SIR ++++
Sbjct:  290 VVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHSLSFDQINEAFELMHAGKSIRTVVKL 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP    +   +PM+LL  RT KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AFDL+ +G+SIR ++
Sbjct:  292 VIVGVPPSAQSLSVNPMSLLLGRTWKGAIFGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL+ RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SGESIR I+
Sbjct:  291 VIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTIL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V+VGV    +   T P  L+  RT KGT FG +K    +P +V +YM+K++++++F+T  + F +INKAFDLM SG SIR +++M
Sbjct:  290 VVVGVAASGEEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLMHSGNSIRTVLKM 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP    +   +PM+LL  R+ KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AFDL+ +G+SIR ++
Sbjct:  291 VIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG  +G +K + D+P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR I+
Sbjct:  291 VIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSKEDIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTIL 373          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADHH_GADMO1.339e-1542.17Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADHX_OCTVU1.748e-1544.58Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADHX_HUMAN1.748e-1543.53Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_DROME3.895e-1545.24Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADHX_HORSE6.644e-1540.00Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADH1_RAT6.644e-1544.58Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1E_HORSE6.644e-1545.78Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADHX_RAT8.677e-1543.53Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADH1_PERMA8.677e-1543.37Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1A_MACMU8.677e-1544.58Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
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