CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP   +    +PM L   RT KG+ FG +K +  +P +V  YM K++ L+  ITH +PF +IN+ F+L+ +G+SIR ++
Sbjct:  290 VIVGVPPASEKITFNPMMLFTGRTWKGSVFGGWKSKESVPKLVADYMEKKINLDGLITHTLPFDKINEGFELLRTGKSIRSVL 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            +++GV        T P  L+  R  KG+ FG  K RS+LP +VE  M  +++LE F+TH +P  +IN+AF+LM  G+SIR +I
Sbjct:  294 IIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ FDL+ +G+SIR ++
Sbjct:  291 VIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ FDL+ +G+SIR ++
Sbjct:  291 VIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP         PM L + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PFS+IN+ FDL+ +G+SIR ++
Sbjct:  101 VIVGVPPAAQNITFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINEGFDLLRAGKSIRSVL 183          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR ++
Sbjct:  291 VIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR ++
Sbjct:  291 VIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = -1
Query:  330 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 581
            V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  285 VIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V+VGV        T P  L+  R  KGT FG +K R+ +P +V+KYM KE++++++ITH +  ++IN AF L+  G  +RC++ M
Sbjct:  295 VIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHLLHEGGCLRCVLAM 379          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VG P         PM L   RT KG  FG +K R D+P +V +++ K+ +L++ ITH +PF+ IN+ F+L+ SG+SIR ++
Sbjct:  290 VVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELLYSGKSIRTVL 372          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADH1_ALLMI7.345e-1440.96Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
FRMA_HAEIN9.593e-1442.17S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH1_GEOKN9.593e-1443.37Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU9.593e-1443.37Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_ANAPL9.593e-1443.37Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
ADH1B_PANTR9.593e-1442.17Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN9.593e-1442.17Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
FRMA_ECOLI1.253e-1345.24S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADHX_MAIZE1.253e-1340.00Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADH7_MOUSE1.253e-1340.96Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
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