CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.253e-13
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP   +     PM L + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  290 VIVGVPPAAEKLSFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMEKKFVLDPLITHTLPFHKINEGFDLLRTGKSIRSVL 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ FDL+ SG+SIR ++
Sbjct:  291 VIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +P+ LL  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ FDL+ SG+SIR I+
Sbjct:  291 VIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR I+
Sbjct:  291 VIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ FDL+ +G+SIR ++
Sbjct:  291 VIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ FDL+ +G+SIR ++
Sbjct:  292 VIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRSVL 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GVP   +     PM L + RT KG+ FG +K +  +P +V  YM K+  LE  ITH +PF +IN+ FDL+  G+SIR ++
Sbjct:  291 VILGVPPAAEKISFDPMLLFSGRTWKGSVFGGWKSKDAVPKLVADYMEKKFVLEPLITHTLPFIKINEGFDLLRKGKSIRSVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            +++GV        T P  L+  R  KGT FG  + R+D+P +V+ YM+ ++E++  ITH +   +INK FDLM +GESIR ++
Sbjct:  291 IIIGVAPAGAEISTRPFQLVTGRVWKGTAFGGARGRTDVPQIVDWYMDGKIEIDPMITHTLSLDDINKGFDLMHAGESIRSVV 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            V++G+            +LL  R + G+ FG  K + D+P +V+ Y+ KE+ L+ FITH + F EINKAF L+  G+S+RCI+ MD
Sbjct:  302 VMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +P+ L   RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR ++
Sbjct:  291 VVVGVPPNASMITYNPLMLFTGRTWKGCVFGGWKSKDSVPKLVSDFMQKKFVLDPLITHTLPFEKINEGFDLLRSGKSIRTVL 373          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADH1_STRCA1.253e-1342.17Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1G_HUMAN2.137e-1342.17Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1G_PAPHA2.791e-1342.17Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1A_HUMAN2.791e-1343.37Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1_COTJA3.645e-1340.96Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1_CHICK3.645e-1340.96Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1_APTAU3.645e-1342.17Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
FADH_PARDE4.761e-1339.76S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHL1_ARATH4.761e-1340.70Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH1_NAJNA4.761e-1340.96Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
back to top