CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:40..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GV        T P  L+  RT KG  FG  K RS LP +V  Y++ ++++E+FITH  P + INKAF+ M +G+ IR ++
Sbjct:  296 VIIGVAAAGKEISTRPFQLVTGRTWKGAAFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEMHAGDCIRAVV 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN  FDL+ SG+SIR I+
Sbjct:  291 VIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINDGFDLLHSGKSIRTIL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GV        T P  L+  R   GT FG  K RS LP +VE+ M  E++L  F+TH +   +IN+AFDLM  G+SIR +I
Sbjct:  285 VIIGVAGAGQEISTRPFQLVTGRKWMGTAFGGVKGRSQLPGMVEQSMRGEIQLAPFVTHTMELKDINQAFDLMHDGKSIRSVI 367          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V++GV        T P  L+  R  KGT FG  K R+ LP +VE  M+ ++EL  F+TH +   +IN+AFDLM  G+SIR +I
Sbjct:  285 VIIGVAGAGKEISTRPFQLVTGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEAFDLMHDGKSIRTVI 367          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  327 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 581
            V++GV        T P  L+  RT KG  FG +K    +P +V+ YM  ++ +++F++H++PF  IN+AFDLM +G+SIR ++++
Sbjct:  292 VILGVAGGGQEISTRPFQLVTGRTWKGAAFGGWKSVESVPKLVDDYMAGKIMVDEFVSHSLPFDSINEAFDLMHAGKSIRTVLQL 376          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP         PM L   RT KG  FG  K R D+P +V +++ K+ +L++ ITH +PF +I++ F+L+ SG+SIR ++
Sbjct:  290 VVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVL 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VG P         PM L   RT KG  FG +K R D+P +V +++ K+ +L + ITH +PF  I++ F+L+ SG+SIR ++
Sbjct:  290 VVVGAPPSAKMLSYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELLYSGQSIRTVL 372          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            +++GV       +T P  L+  R  KG+ FG  + R+D+P +V+ YM  +++++  ITH +   EINK FDLM +GESIR ++
Sbjct:  292 IVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLMHAGESIRSVV 374          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP    +    P  LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  P ++IN+ FDL+ +G+SIR ++
Sbjct:  291 VIVGVPPNAQSLTIDPKVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPLAKINEGFDLLRAGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  324 LVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 578
            ++GV        T P  L+  RT KGT FG +K    +P +V+ YMNK++ +++FITH     +IN AFD++  GES+R ++  +
Sbjct:  298 IIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVLAFE 382          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
FADH_CANMA6.218e-1340.96S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH1A_PONAB6.218e-1343.37Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
FRMA_SYNY38.121e-1343.37S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FRMA_PASPI8.121e-1343.37S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADHX_MYXGL8.121e-1337.65Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH7_HUMAN8.121e-1340.96Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH7_RAT1.385e-1239.76Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADHI_RHOS42.363e-1238.55Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
ADH1_GEOAT2.363e-1240.96Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADHX_CAEEL3.086e-1237.65Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
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