CN189347

Overview
NameCN189347
Unique NameCN189347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  333 VGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 575
            +GV          P  L+  RT+ GTFFG +K    +P +V  Y NK+  L+  +TH +PF +I++AFDLM  G+SIR I+
Sbjct:  298 IGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            VLVG  +  D   T P+ L+  RT KG+ FG +K +  +P +V+ Y++K+++L++FITH +P   +N A DLM  G+ IR ++ ++
Sbjct:  291 VLVGWTDLHDV-ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSLE 375          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.030e-12
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGVP         P+ L   RT KG+ FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+L+ SG+SIR ++
Sbjct:  291 VIVGVPPSASQIAFDPLLLFTGRTWKGSVFGGWKSKDAVPRLVSDFMGKKFILDPLITHTMPFEKINEGFELLRSGKSIRTVL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VG+          P+ +L  R L G  FG +K + D+P +V  Y+NK+ + +  ITH +PF +IN+ F+L+ +G+SIR I+
Sbjct:  291 VIVGLAPSSAVMSFDPLLILTGRILTGAVFGGWKSKDDVPKLVRDYLNKKFDFDPLITHYMPFEKINEGFELLRNGKSIRTIL 373          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            V+VGV   + +    PM L+  R +K TFFG +K    +P +V  YM K+ +L+  ++H +P  +IN AFDLM +G+S R I+
Sbjct:  295 VIVGVAVGEQSIPFSPMQLIMGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  333 KDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 560
            K D      ++++  R++KGTFFG +K    +P++V  Y NK+ +L+  +THA+PF +IN A DLM  G+SIR I+
Sbjct:  300 KVDEMNISTVDMILGRSVKGTFFGGWKSVDSVPNLVTDYKNKKFDLDLLVTHALPFDKINDAIDLMNQGKSIRTIL 375          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 29/86 (33.72%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  324 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 581
            +++GV    +   T P  L+  R  KG+ FG  K RS++  +++ Y    +++E+FITH  PF EIN+AF+ + +G+ +R +++ D
Sbjct:  298 IIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSD 383          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 27/63 (42.86%), Postives = 46/63 (73.02%), Query Frame = -1
Query:  327 RTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRM 515
            + L G+ FG  K ++ +P ++++Y++ E+EL+KF+TH + F EIN AF L+L G+ IRC++ M
Sbjct:  327 KILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEINDAFQLLLEGKCIRCVLWM 389          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  333 KDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 560
            K D      ++++  R++ GTFFG +K    +P++V  Y NK+ +L+  +THA+PF  IN A DLM  G+SIR I+
Sbjct:  300 KVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTIL 375          
BLAST of CN189347 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  333 VLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 581
            ++VG+P         P  +   RT KG+ FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+L+ +G+SIR ++
Sbjct:  291 IIVGLPPSASEITFSPGLIFTGRTWKGSVFGGWKSKDSVPRLVSDFMQKKFSLDPLITHTMPFDKINEGFELLRAGKSIRSVL 373          
The following BLAST results are available for this feature:
BLAST of CN189347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ADH4_HUMAN3.086e-1240.74Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_GADCA4.030e-1238.37Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH1B_UROHA4.030e-1239.76Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1_RANPE5.264e-1237.35Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH4_STRCA8.979e-1239.76Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH4_RAT8.979e-1242.11Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FADH_YEAST2.612e-1133.72S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHL7_ARATH3.412e-1142.86Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADH4_MOUSE4.456e-1140.79Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1A_UROHA4.456e-1134.94Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189347 ID=CN189347; Name=CN189347; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAAGAAAGAAGATTTACACGAAAATCTTTATTA
CATAAGCTACAAAAAGAAGTACAGTAAGAAATAGGTCGAAAACACACCTC
TTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAATAAAAA
GGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCCATTCGCA
GCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTAATATAT
AACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGATTGATC
AGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCTAATGCT
TTCTCCCGAAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGAAGGGCA
CAGCATGAGTGATGAATTTCTCAAGCTCCATCTCCTTGTTCATGTATTTT
TCAACAACTGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAAAAAGGT
ACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCTTGAATG
CATCATCTTTGTTTGGCACACCCACAAGCAC
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