CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_OSTLU (Protein translocase subunit secA, chloroplastic OS=Ostreococcus lucimarinus (strain CCE9901) GN=secA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.377e-57
Identity = 113/216 (52.31%), Postives = 149/216 (68.98%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            LA N+ +LV R    F+F I+DEVDS+LIDE R PL+ISG A K   RY  AAK+A+   +  HY V+ K  SV L+EEG   AE  L+  DL+D    WA +++NA+KAKE  +RDV YIVR  + +I++E +GR  + RRWS+G+HQAVEAKEG+ IQ ++V +A +TYQ+ FK YPKL GMTGTA+TE  EF  ++E+ V  VPTN P  R D
Sbjct:  184 LAQNTGELVQR---DFNFCIIDEVDSILIDEARTPLIISGVADKPSERYIQAAKIADAFEKDYHYKVDEKQKSVLLSEEGYEAAEDLLQVTDLYDPRTQWALYIINAIKAKELQKRDVNYIVRGQEIIIVDEFSGRTMQGRRWSDGLHQAVEAKEGVTIQNETVTIASVTYQAFFKSYPKLGGMTGTAETEITEFSNIYELEVAVVPTNRPVSRED 396          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_THAPS (Protein translocase subunit secA OS=Thalassiosira pseudonana GN=secA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.295e-57
Identity = 108/217 (49.77%), Postives = 154/217 (70.97%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A+N  Q+V+    PF++ IVDEVDS+ IDE + PL+IS      + +Y VAA+VAE L   +H+ V+ KN ++ LTE+G A  E  L+  DL++ NDPW  ++++A+KA   + R+V YIV+N + +I++E TGR+   RRW+EG+HQAVEAKEG+ I+ ++   A ITYQ+ F LYPKLSGMTGTAKT E EF K++ +PV E+PT  PN+R DL
Sbjct:  185 MASNLSQVVL---PPFNYCIVDEVDSIFIDEAQVPLIISQAVETCIDKYIVAAEVAEYLEVNVHFKVDEKNRNIILTEQGTAQIEKILQVEDLYNPNDPWIPYILSAIKATALFFRNVHYIVQNNQIIIVDEFTGRIMPDRRWNEGLHQAVEAKEGVPIRQNTETAASITYQNFFLLYPKLSGMTGTAKTSEVEFEKIYNLPVEEIPTARPNLRKDL 398          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PEA (Protein translocase subunit secA, chloroplastic OS=Pisum sativum GN=secA PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.916e-57
Identity = 113/216 (52.31%), Postives = 152/216 (70.37%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            LA + E+LV+R    F++ ++DEVDS+LIDE R PL+ISG A K   +Y  AAK+A+   + +HYTV+ K  SV L+E+G   AE  L   DL+D  + WA FV+NA+KAKE + RDV YI+R  + LI++E TGRV + RRWS+G+HQAVEAKEGL IQ ++V +A I+YQ+ F  +PKL GMTGTA TE  EF  ++++ V  VPTN P IR D
Sbjct:  253 LATSVEELVIRG---FNYCVIDEVDSILIDEARTPLIISGPAEKSSDQYFKAAKIADAFERDIHYTVDEKQKSVLLSEQGYEDAEEILAVKDLYDPREQWASFVINAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATEITEFESIYKLKVTIVPTNKPMIRKD 465          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNP2 (Protein translocase subunit secA OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=secA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 108/223 (48.43%), Postives = 155/223 (69.51%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A   +++V R   PF++ I+DEVDS+L+DE R PL+ISG+  +   +Y  AA++A+ LV  +       Y V+ K  +V +T+EG A AE  L   DL+DE +PWA ++ NA+KAKE +++DV YIVR  + +I++E TGR+   RRWS+G+HQA+EA+EG+ IQ ++  +A ITYQ+ F LYPKLSGMTGTAKTEE EF K++ + V  +PTN P  R DL
Sbjct:  194 MATTIQEVVQR---PFNYCIIDEVDSILVDEARTPLIISGQIERPTEKYLQAAEIAKQLVPQVEEDGPGDYEVDEKARNVLMTDEGFAKAEQLLGVTDLYDEQNPWAHYIFNAVKAKELFKKDVNYIVRGDEVVIVDEFTGRIMPGRRWSDGLHQAIEAQEGVTIQKETQTLANITYQNFFLLYPKLSGMTGTAKTEETEFEKVYNLEVTIIPTNRPTKRQDL 413          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ARATH (Protein translocase subunit secA, chloroplastic OS=Arabidopsis thaliana GN=secA PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 110/211 (52.13%), Postives = 149/211 (70.62%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            E+LV+R    F++ ++DEVDS+LIDE R PL+ISG A K   +Y  AAK+A    + +HYTV+ K  +V LTE+G   AE  L+  DL+D  + WA +V+NA+KAKE + RDV YI+R  + LI++E TGRV + RRWS+G+HQAVEAKEGL IQ +S+ +A I+YQ+ F  +PKL GMTGTA TE  EF  ++++ V  VPTN P IR D
Sbjct:  271 EELVLR---DFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKD 478          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ANTSP (Protein translocase subunit secA OS=Antithamnion sp. GN=secA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57
Identity = 110/217 (50.69%), Postives = 152/217 (70.05%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A   E LV R    F FAI+DE+DS+LIDE R PL+ISG A+  +  Y  A KVA LL Q   Y ++ KN ++ L E GI  +E  L+ N+L+D   PW ++++NALKAKE + ++  YIV+N + +I++E TGR+ E RRWS+G+HQA+EAKE  KIQ ++  +A ITYQ+LF LY KLSGMTGTAKTEE E  +++++ V+E+PTN  N R DL
Sbjct:  183 MAIQKEDLVQR---DFFFAIIDEIDSILIDEARTPLIISGPANNKLTEYLEANKVANLLNQNTDYEIDEKNKNIILNENGIKKSENILDINNLYDIQKPWIKYILNALKAKEIFIKNKDYIVKNNEIVIVDEFTGRIMEGRRWSDGLHQAIEAKEKQKIQQENKTLASITYQNLFLLYEKLSGMTGTAKTEEAELEQIYKLKVVEIPTNKLNQRKDL 396          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNP6 (Protein translocase subunit secA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.012e-56
Identity = 113/226 (50.00%), Postives = 157/226 (69.47%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA  E++V R   PF++A++DEVDS+LIDE R PL+ISG+  +   +Y  A++VA LL +  +          Y V+ K  +V LT++G   AE  L  +DL+D NDPWA ++ NA+KAKE + +DV YIVR G+ +I++E TGRV   RRWS+G+HQAVE+KEG++IQ ++  +A ITYQ+ F LYPKLSGMTGTAKTEE EF K +++ V  VPTN  + R D
Sbjct:  195 MAAVIEEVVQR---PFNYAVIDEVDSILIDEARTPLIISGQVDRPSEKYMRASEVAALLQRSTNTDSEEEPDGDYEVDEKGRNVLLTDQGFINAEQLLGVSDLFDSNDPWAHYIFNAIKAKELFIKDVNYIVRGGEIVIVDEFTGRVMPGRRWSDGLHQAVESKEGVEIQPETQTLASITYQNFFLLYPKLSGMTGTAKTEELEFEKTYKLEVTVVPTNRVSRRRD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNE7 (Protein translocase subunit secA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.012e-56
Identity = 113/226 (50.00%), Postives = 157/226 (69.47%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA  E++V R   PF++A++DEVDS+LIDE R PL+ISG+  +   +Y  A++VA LL +  +          Y V+ K  +V LT++G   AE  L  +DL+D NDPWA ++ NA+KAKE + +DV YIVR G+ +I++E TGRV   RRWS+G+HQAVE+KEG++IQ ++  +A ITYQ+ F LYPKLSGMTGTAKTEE EF K +++ V  VPTN  + R D
Sbjct:  195 MAAVIEEVVQR---PFNYAVIDEVDSILIDEARTPLIISGQVDRPSEKYMRASEVAALLQRSTNTDSEEEPDGDYEVDEKGRNVLLTDQGFINAEQLLGVSDLFDSNDPWAHYIFNAIKAKELFIKDVNYIVRGGEIVIVDEFTGRVMPGRRWSDGLHQAVESKEGVEIQPETQTLASITYQNFFLLYPKLSGMTGTAKTEELEFEKTYKLEVTVVPTNRVSRRRD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ACAM1 (Protein translocase subunit secA OS=Acaryochloris marina (strain MBIC 11017) GN=secA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.628e-56
Identity = 111/217 (51.15%), Postives = 152/217 (70.05%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            ++ + E++V R   P ++ ++DEVDSVLIDE R PL+ISG+  +   +Y  A+KVA  L    HY V+ K  +V LT+EG   AE  L  +DL+D  DPWA +V NA+KAKE +  DV YIVRN + +I++E TGRV   RRWS+G+HQA+EAKE ++IQ ++  +A ITYQ+LF LY KL+GMTGTAKTEE EF K++++ V  VPTN  N R D+
Sbjct:  187 MSTSIEEVVQR---PLNYCVIDEVDSVLIDEARTPLIISGQVERPTEKYLDASKVANALQPEEHYEVDEKARNVILTDEGFVEAEKILGVSDLFDPEDPWAHYVFNAIKAKELFINDVNYIVRNDEIVIVDEFTGRVMPGRRWSDGLHQAIEAKEKVEIQNETQTLATITYQNLFLLYDKLAGMTGTAKTEEAEFEKIYKLEVTIVPTNRSNQRQDI 400          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SPIOL (Protein translocase subunit secA, chloroplastic OS=Spinacia oleracea GN=secA PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.986e-56
Identity = 107/216 (49.54%), Postives = 151/216 (69.91%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            LA + ++LV+R    F+F ++DEVDS+LIDE R PL+ISG A K   RY  AAK+A    + +HYTV+ K  +V + E+G   AE  L+  DL+D  + WA +++NA+KAKE + +DV YI+R  + LI++E TGRV + RRWS+G+HQAVEAKEG+ IQ +++ +A I+YQ+ F  +PKL GMTGTA TE  EF  ++++ V  VPTN P IR D
Sbjct:  275 LATSVDELVLRG---FNFCVIDEVDSILIDEARTPLIISGPAEKPSERYYKAAKIAAAFERDIHYTVDEKQKTVLIMEQGYQDAEEILDVEDLYDPREQWALYILNAIKAKELFLKDVNYIIRGKEILIVDEFTGRVMQGRRWSDGLHQAVEAKEGVPIQNETITLASISYQNFFLQFPKLCGMTGTAATESAEFESIYKLKVTIVPTNKPMIRKD 487          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA_OSTLU2.377e-5752.31Protein translocase subunit secA, chloroplastic OS... [more]
SECA_THAPS5.295e-5749.77Protein translocase subunit secA OS=Thalassiosira ... [more]
SECA_PEA6.916e-5752.31Protein translocase subunit secA, chloroplastic OS... [more]
SECA_SYNP29.032e-5748.43Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_ARATH9.032e-5752.13Protein translocase subunit secA, chloroplastic OS... [more]
SECA_ANTSP9.032e-5750.69Protein translocase subunit secA OS=Antithamnion s... [more]
SECA_SYNP62.012e-5650.00Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SYNE72.012e-5650.00Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_ACAM12.628e-5651.15Protein translocase subunit secA OS=Acaryochloris ... [more]
SECA_SPIOL9.986e-5649.54Protein translocase subunit secA, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
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