CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA1_STAA1 (Protein translocase subunit secA 1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=secA1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 103/213 (48.36%), Postives = 142/213 (66.67%), Query Frame = 2
Query:   17 SEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            SE  VMR   P HFAI+DEVDS+LIDE R PL+ISGEA K  + Y  A   A++L Q   Y  + K  +V LTE+G   AE   +  +L+D +N      +  AL+A    +RDV Y+V +G+ LI+++ TGR    RR+SEG+HQA+EAKEG++IQ +S  +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V ++PTN P  R D
Sbjct:  199 SEDRVMR---PLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRND 408          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_TROWT (Protein translocase subunit secA OS=Tropheryma whipplei (strain Twist) GN=secA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 95/202 (47.03%), Postives = 145/202 (71.78%), Query Frame = 2
Query:   53 HFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVA-AKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +F I+DEVDS+LIDE R PL+ISG +S +V+R+ V  A +A  L  G  Y V+ + ++V + E GIA  E  L  ++L++  N P   F+ N++KAKE ++RD  Y+V +G+ +I++E TGR+   RR++EG+HQA+EAKEG++I+A++  +A +T Q+ F+LY K+SGMTGTA TE  EF+  +++PV+ +PTN PNIR D
Sbjct:  204 NFVILDEVDSILIDEARTPLIISGSSSGEVSRWFVEFAGIARALTAGEDYDVDERKHTVGVLEPGIAKVEDLLGISNLYESVNTPLISFLNNSIKAKELFKRDRDYVVLDGEVMIVDEHTGRILSGRRYNEGLHQAIEAKEGVEIKAENQTLATVTLQNYFRLYKKISGMTGTAVTEASEFMSTYKLPVVSIPTNKPNIRKD 405          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_TROW8 (Protein translocase subunit secA OS=Tropheryma whipplei (strain TW08/27) GN=secA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 95/202 (47.03%), Postives = 145/202 (71.78%), Query Frame = 2
Query:   53 HFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVA-AKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +F I+DEVDS+LIDE R PL+ISG +S +V+R+ V  A +A  L  G  Y V+ + ++V + E GIA  E  L  ++L++  N P   F+ N++KAKE ++RD  Y+V +G+ +I++E TGR+   RR++EG+HQA+EAKEG++I+A++  +A +T Q+ F+LY K+SGMTGTA TE  EF+  +++PV+ +PTN PNIR D
Sbjct:  204 NFVILDEVDSILIDEARTPLIISGSSSGEVSRWFVEFAGIARALTAGEDYDVDERKHTVGVLEPGIAKVEDLLGISNLYESVNTPLISFLNNSIKAKELFKRDRDYVVLDGEVMIVDEHTGRILSGRRYNEGLHQAIEAKEGVEIKAENQTLATVTLQNYFRLYKKISGMTGTAVTEASEFMSTYKLPVVSIPTNKPNIRKD 405          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACC2 (Protein translocase subunit secA OS=Bacillus cereus (strain G9842) GN=secA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 99/212 (46.70%), Postives = 140/212 (66.04%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ V R   P HFAI+DEVDS+L+DE R PL+ISG+A K    Y  A      L     Y+ ++K  +V LTE+GI  AE A    +L+D ++      +   L+A     RD  Y+V+ G+ +I+++ TGR+ + RR+SEG+HQA+EAKEG++IQ +S+ +A IT+Q+ F++Y KLSGMTGTAKTEE+EF  ++ M VI +PTN P IR D
Sbjct:  194 EQCVQR---PLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKEYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_STACT (Protein translocase subunit secA OS=Staphylococcus carnosus (strain TM300) GN=secA PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 102/213 (47.89%), Postives = 144/213 (67.61%), Query Frame = 2
Query:   17 SEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            SE+ VMR   P HFAI+DEVDS+LIDE R PL+ISGEA K  + Y  A   A++L     Y  + K  SV+LT++G   AE   + ++L+D +N      +  AL+A    +RDV Y+V +G+ LI+++ TGR    RR+SEG+HQA+EAKEG++IQ +S  +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V ++PTN P  R D
Sbjct:  199 SEERVMR---PLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKAEDDYNYDEKTKSVQLTDQGADKAERMFKLDNLYDLKNVDIITHINTALRANYTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNRPVQRED 408          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_RHOSR (Protein translocase subunit secA OS=Rhodococcus sp. (strain RHA1) GN=secA PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 95/200 (47.50%), Postives = 140/200 (70.00%), Query Frame = 2
Query:   56 FAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            FA+VDEVDS+LIDE R PL+ISG A      Y   A++A LL + +HY V+++  ++ + E G+ L E  L  ++L++  N P   ++ NA+KAKE Y +D  YIVR G+ +I++E TGRV   RR++EG+HQA+EAKE ++I+A++  +A IT Q+ F+LY KLSGMTGTA+TE  E  +++ + VI +PTN P +RVD
Sbjct:  205 FAVVDEVDSILIDEARTPLIISGPADASSKWYAEFARIAPLLKRDVHYEVDIRKRTIGVHEAGVELVEDQLGIDNLYEAANSPLVSYLNNAIKAKELYTKDKDYIVREGEVIIVDEFTGRVLVGRRYNEGMHQAIEAKEKVEIKAENQTLATITLQNYFRLYDKLSGMTGTAETEAAELHQIYNLGVIPIPTNRPMVRVD 404          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_DESAA (Protein translocase subunit secA OS=Desulfatibacillum alkenivorans (strain AK-01) GN=secA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 98/201 (48.76%), Postives = 138/201 (68.66%), Query Frame = 2
Query:   53 HFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            HFAIVDEVDS+LIDE R PL+ISG A K    Y     V   L +  HYT++ K  +V LTEEG+ + E  L  ++L+D +N      V  ALKA   ++RDV YIV+ G+ +I++E TGR+   RR+S+G+HQA+EAKE +KI+ ++  +A IT+Q+ F++Y KLSGMTGTA TE  EF K++++ V+ +PTN+P IR D
Sbjct:  204 HFAIVDEVDSILIDEARTPLIISGPAEKSTQLYYQVDVVIPRLREEDHYTIDEKARTVVLTEEGVKVVEGGLGVDNLYDHKNMEILHHVNQALKAHTLFKRDVDYIVKQGEVIIVDEFTGRLMPGRRYSDGLHQALEAKEKVKIENENQTLASITFQNYFRMYEKLSGMTGTADTEAPEFKKIYDLDVVVIPTNMPMIRKD 404          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_CARHZ (Protein translocase subunit secA OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=secA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 100/218 (45.87%), Postives = 149/218 (68.35%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLW-DENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A + +Q+V R     ++AI+DEVDS+LIDE R PL+ISGEA K    Y   AK+ + LV G  YTV+ K ++V  TE GI   E  L   +L+ DE+      +  ALKA+   +RD  Y+V++G+ +I++E TGR+   RR+S+G+HQA+EAKEG+KI+ ++  +A IT+Q+ F++Y KL+GMTGTA+TEE EF K++ + V+ +PT+ P IR DL
Sbjct:  189 MAIHPDQVVQR---ELYYAIIDEVDSILIDEARTPLIISGEAEKSTDLYYTFAKIVKQLVPGEDYTVDEKAHAVMPTEAGIHKVEKMLGIQNLYADEHMELTHHLNAALKAQALMKRDRDYVVKDGQVIIVDEFTGRLMFGRRYSDGLHQAIEAKEGVKIEQETQTLATITFQNYFRMYEKLAGMTGTAETEENEFRKIYNLSVVVIPTHKPMIRKDL 403          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACSK (Protein translocase subunit secA OS=Bacillus clausii (strain KSM-K16) GN=secA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 96/212 (45.28%), Postives = 142/212 (66.98%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN-ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ+V R   P HFA++DEVDS+LIDE R PL+ISG   +    Y  A     +L +   YT + K  SV+LT+EG+  AE A   ++L+D+        +N +LKA     RD  Y+V +G+ +I+++ TGR+ + RR+S+G+HQA+EAKEGL++Q +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V+ +PTN P  R D
Sbjct:  195 EQMVQR---PLHFALIDEVDSILIDEARTPLIISGSVERKTKLYGQANTFVRVLKRDADYTYDEKTKSVQLTDEGVNKAERAFNIDNLYDQKHVQLNHHINQSLKAHVAMHRDADYVVEDGEVVIVDQFTGRLMKGRRYSDGLHQALEAKEGLEVQRESITLASITFQNYFRMYQKLAGMTGTAKTEEEEFRNIYGMDVMVIPTNKPVARED 403          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACC4 (Protein translocase subunit secA OS=Bacillus cereus (strain B4264) GN=secA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 99/212 (46.70%), Postives = 140/212 (66.04%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ V R   P HFAI+DEVDS+L+DE R PL+ISG+A K    Y  A      L     Y+ ++K  +V LTE+GI  AE A    +L+D ++      +   L+A     RD  Y+V+ G+ +I+++ TGR+ + RR+SEG+HQA+EAKEG++IQ +S+ +A IT+Q+ F++Y KLSGMTGTAKTEE+EF  ++ M VI +PTN P IR D
Sbjct:  194 EQCVQR---PLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDD 402          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA1_STAA15.868e-4848.36Protein translocase subunit secA 1 OS=Staphylococc... [more]
SECA_TROWT7.664e-4847.03Protein translocase subunit secA OS=Tropheryma whi... [more]
SECA_TROW87.664e-4847.03Protein translocase subunit secA OS=Tropheryma whi... [more]
SECA_BACC27.664e-4846.70Protein translocase subunit secA OS=Bacillus cereu... [more]
SECA_STACT1.001e-4747.89Protein translocase subunit secA OS=Staphylococcus... [more]
SECA_RHOSR1.001e-4747.50Protein translocase subunit secA OS=Rhodococcus sp... [more]
SECA_DESAA1.001e-4748.76Protein translocase subunit secA OS=Desulfatibacil... [more]
SECA_CARHZ1.001e-4745.87Protein translocase subunit secA OS=Carboxydotherm... [more]
SECA_BACSK1.001e-4745.28Protein translocase subunit secA OS=Bacillus claus... [more]
SECA_BACC41.001e-4746.70Protein translocase subunit secA OS=Bacillus cereu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
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