CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNPW (Protein translocase subunit secA OS=Synechococcus sp. (strain WH7803) GN=secA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.347e-54
Identity = 109/227 (48.02%), Postives = 147/227 (64.76%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA+  ++V R    F + ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+VA  L +              Y V+ K  S  LT+EG A AE  +   DL+D  DPWA ++ NALKAK+ + RDV YIVR+G+A+I++E TGRV   RRWS+G HQA+EAKE L IQ ++  +A ITYQ+ F LYP+L+GMTGTAKTEE EF K +++    VPTN    R D
Sbjct:  194 MAADINEVVQR---EFQYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALTRAAEMGKDGIDPEGDYEVDEKQRSCTLTDEGFAKAEQMIGVADLYDPQDPWAHYITNALKAKDLFTRDVNYIVRDGEAVIVDEFTGRVMPGRRWSDGQHQAIEAKEALAIQPETQTLASITYQNFFLLYPRLAGMTGTAKTEETEFEKTYKLETTIVPTNRVRARQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PHATR (Protein translocase subunit secA OS=Phaeodactylum tricornutum GN=secA PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.347e-54
Identity = 103/217 (47.47%), Postives = 143/217 (65.90%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A N + +V+R   PF++ I+DEVDS+LIDE + PL+IS      + +Y VAA++ + L    HY V+ KN +V LTE+G    E  L   DL+D  DPW  +++NALKA   Y  +V YIV+N + +I++E TGR+   RRW +G+HQA+EAKE L I+  +  VA ITYQ+ F LYPKLSGMTGT KT E EF K++ + V ++PT  P  R DL
Sbjct:  185 MALNLKDVVLR---PFNYCIIDEVDSILIDEAQTPLIISNNIQTPIEKYIVAAEITDYLELNTHYKVDEKNKNVILTEDGSKQIEQILSVQDLYDPRDPWIPYIINALKANALYFNNVHYIVQNNRIIIVDEFTGRIMADRRWGDGLHQAIEAKEKLPIRQKTETVAAITYQNFFLLYPKLSGMTGTGKTAETEFEKIYNLSVEQIPTERPTQRKDL 398          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_THET8 (Protein translocase subunit secA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=secA PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.594e-53
Identity = 113/229 (49.34%), Postives = 154/229 (67.25%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A + +QLV+R   P H+AI+DEVDS+LIDE R PL+ISG A K    Y   A++A+ L +GL             YTVE KN SV LT +GIA AE  L    L+  EN   A  ++ A++AKE Y RD  YIV++G+ +I++E TGR+   RR+ EG+HQA+EAKEG++I+ ++  +A ITYQ+ F+LY K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D
Sbjct:  188 MAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKD 416          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PROM1 (Protein translocase subunit secA OS=Prochlorococcus marinus (strain NATL1A) GN=secA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.594e-53
Identity = 111/227 (48.90%), Postives = 146/227 (64.32%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA+  ++V R    F F ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+V E L + +            Y V+ K  S  LT+EG A  E  L   DL+D  +PWA +V NALKAKE + +DV YIVRN +A+I++E TGRV   RRWS+G HQA+EAKE L IQ ++  +A ITYQ+ F LYP+LSGMTGTAKTEE EF K +++    VPTN    R D
Sbjct:  194 MAADKSEIVQR---DFQFCVIDEVDSILIDEARTPLIISGQVERSQEKYKQAAQVVENLKRAIDTSKDGIDPEGDYEVDEKQRSCILTDEGFANTEKLLNVQDLFDPKEPWAHYVTNALKAKELFIKDVNYIVRNDEAVIVDEFTGRVMPGRRWSDGQHQAIEAKENLSIQPETQTLASITYQNFFLLYPRLSGMTGTAKTEEVEFEKTYKLQTTVVPTNRKISRQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_THET2 (Protein translocase subunit secA OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=secA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.082e-53
Identity = 112/229 (48.91%), Postives = 154/229 (67.25%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A + +QLV+R   P H+AI+DEVDS+LIDE R PL+ISG A K    Y   A++A+ L +GL             YTVE KN SV LT +GIA AE  L    L+  EN   A  ++ A++AKE Y RD  YIV++G+ +I++E TGR+   RR+ EG+HQA+EAKEG++I+ ++  +A ITYQ+ F+LY K +GMTGTAKTEEKEF +++ M V+ VPTN P +R D
Sbjct:  188 MAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVVRKD 416          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_CYAP8 (Protein translocase subunit secA OS=Cyanothece sp. (strain PCC 8801) GN=secA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.082e-53
Identity = 103/210 (49.05%), Postives = 147/210 (70.00%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVA-ELLVQGLH-----YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +PF++ I+DEVDS+LIDE R PL+ISG+  +   +Y  AA +A +LL Q        Y V+ K  +V +T+ G   AE  L   DL+D+++PWA ++ NA+KAKE + +DV Y++RN + +I++E TGRV   RRWS+G+HQA+EAKEG++IQ ++  +A ITYQ+ F LYPKLSGMTGTAKTEE E  K++ + V  +PTN  + R DL
Sbjct:  204 RPFNYCIIDEVDSILIDEARTPLIISGQVERPTEKYLQAAAIAAQLLKQESEDDPGDYEVDEKARNVLMTDAGFEKAEQLLNVQDLYDQDNPWAHYIFNAIKAKELFTKDVNYMIRNNEIVIVDEFTGRVLPGRRWSDGLHQAIEAKEGVEIQRETQTLATITYQNFFLLYPKLSGMTGTAKTEETELEKVYNLQVTIIPTNRISRRYDL 413          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNSC (Protein translocase subunit secA OS=Synechococcus sp. (strain CC9605) GN=secA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53
Identity = 109/227 (48.02%), Postives = 148/227 (65.20%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA+  ++V R    F + ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+VA  L +              Y V+ K  S  LT+EG A AE  L   DL++  DPWA ++ NALKAKE + +DV YIVR+G+A+I++E TGRV   RRWS+G HQA+EAKE L IQ+++  +A ITYQ+ F LYP+L+GMTGTAKTEE EF K +++    VPTN    R D
Sbjct:  194 MAADISEVVQR---EFQYCVIDEVDSILIDEARTPLIISGQVERPQEKYQQAAEVANALARAAELSKDGIDPEGDYEVDEKQRSCTLTDEGFAKAEQMLGVADLFNPQDPWAHYITNALKAKELFVKDVNYIVRDGEAVIVDEFTGRVMPGRRWSDGQHQAIEAKEALAIQSETQTLASITYQNFFLLYPRLAGMTGTAKTEEVEFEKTYKLETTIVPTNRVRARQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNS3 (Protein translocase subunit secA OS=Synechococcus sp. (strain CC9311) GN=secA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53
Identity = 110/227 (48.46%), Postives = 146/227 (64.32%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA+  ++V R    F F ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+VA  L +              Y V+ K  S  LT+EG   AE  +   DL++  DPWA ++ NALKAKE + RDV YIVR+G+A+I++E TGRV   RRWS+G HQA+EAKEGL IQ ++  +A ITYQ+ F LYP+L+GMTGTAKTEE EF K + +    VPTN    R D
Sbjct:  194 MAADINEVVQR---EFQFCVIDEVDSILIDEARTPLIISGQVERPQEKYEKAAEVANALERAAEMGKDGIDPEGDYEVDEKQRSSTLTDEGFTKAEALIGVADLYNPQDPWAHYITNALKAKELFVRDVNYIVRDGEAVIVDEFTGRVMPGRRWSDGQHQAIEAKEGLAIQPETQTLASITYQNFFLLYPRLAGMTGTAKTEEVEFEKTYSLQTAIVPTNRVRARQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNS9 (Protein translocase subunit secA OS=Synechococcus sp. (strain CC9902) GN=secA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.552e-53
Identity = 109/227 (48.02%), Postives = 148/227 (65.20%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +AA+  ++V R    F F ++DEVDS+LIDE R PL+ISG+  ++  +Y  AA++A  L +              Y V+ K  S  LT+EG A AE  L   DL+D  DPWA ++ NALKAKE + +DV YIVR+ +A+I++E TGRV   RRWS+G HQA+EAKE L+IQ ++  +A ITYQ+ F LYP+L+GMTGTAKTEE EF K +++    VPTN    R D
Sbjct:  194 MAADISEVVQR---EFQFCVIDEVDSILIDEARTPLIISGQVEREQEKYQQAAQLAASLERSAEMGKDGIDPEGDYEVDEKQRSCTLTDEGFAKAEQTLGVQDLFDPQDPWAHYITNALKAKELFVKDVNYIVRDDEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLQIQPETQTLASITYQNFFLLYPRLAGMTGTAKTEEVEFEKTYKLQTTIVPTNRIRARQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ODOSI (Protein translocase subunit secA OS=Odontella sinensis GN=secA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.058e-53
Identity = 102/217 (47.00%), Postives = 144/217 (66.36%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            LA N   + +R   PF++ IVDEVDSVLIDE   PL+I+      V +Y +A+++ + L   +H+ ++ KN SV LT +G    E  L   DL++  DPW  +V+NA++A   + RDV YIV+N + +I++E TGR+   RRW  G+HQAVEAKE + I+  + + A ITYQ+ F +YPKLSGMTGTAKT E EF K++ +PV E+PT  PN+R DL
Sbjct:  185 LALNIRDVFLR---PFNYCIVDEVDSVLIDEALTPLIIANSVKTCVDKYIIASEITDYLELNVHFEIDEKNKSVLLTNQGTIQIEKILGVQDLYNPRDPWIPYVINAIRASSLFFRDVHYIVQNNRIVIVDEFTGRIMPDRRWRHGLHQAVEAKENVAIRQTTEITASITYQNFFLVYPKLSGMTGTAKTAEVEFDKIYSLPVEEIPTARPNLRQDL 398          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA_SYNPW9.347e-5448.02Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_PHATR9.347e-5447.47Protein translocase subunit secA OS=Phaeodactylum ... [more]
SECA_THET81.594e-5349.34Protein translocase subunit secA OS=Thermus thermo... [more]
SECA_PROM11.594e-5348.90Protein translocase subunit secA OS=Prochlorococcu... [more]
SECA_THET22.082e-5348.91Protein translocase subunit secA OS=Thermus thermo... [more]
SECA_CYAP82.082e-5349.05Protein translocase subunit secA OS=Cyanothece sp.... [more]
SECA_SYNSC2.719e-5348.02Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SYNS32.719e-5348.46Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SYNS93.552e-5348.02Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_ODOSI6.058e-5347.00Protein translocase subunit secA OS=Odontella sine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
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