CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_EMIHU (Protein translocase subunit secA OS=Emiliania huxleyi GN=secA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 100/210 (47.62%), Postives = 144/210 (68.57%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVR-NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTN 631
            +A   E++V R   P  + +VDEVDS+LIDE R PL+ISG +     +Y   +++A +L + +HY ++ KN  V+LT+EG    E AL+  DL+  +DPW  +V+N++KAKE + R+  YIV    + +I++E TGR    RRWS+G+HQA+E+KE L IQ +S  +A ITYQ+LF LY KLSGMTGTAKTEE EF K++ + VI +PT+
Sbjct:  187 MAFTQEEVVQR---PLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISYVLNSIKAKELFIRNTHYIVNVEEEVIIVDEFTGRTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTH 393          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_GUITH (Protein translocase subunit secA OS=Guillardia theta GN=secA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 99/216 (45.83%), Postives = 148/216 (68.52%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A + E +V R   PF+F ++DEVDS+LIDE R PL+ISG  +  V +Y  A  +++ L++ + Y ++ K  +V LT+ GI   E  L   D+++  DPWA ++ NA+KAKE +  ++ YI+RN + +I++E TGR+   RRWS+G+HQA+EAKE + IQ+++  +A ITYQ+ F LYPKLSGMTGTAKTEE E  +++ + V  VPT+    RVD
Sbjct:  187 MAIDLEDIVQR---PFYFCVIDEVDSILIDEARTPLIISGPGNSPVNKYIKANVISQDLIKDIDYEIDEKARNVILTDNGILKCENLLGNTDIFNLQDPWAPYIFNAIKAKELFLENIHYIIRNQEIVIVDEFTGRIMSGRRWSDGLHQAIEAKESVPIQSETQTLASITYQNFFLLYPKLSGMTGTAKTEETELDRIYGLEVNCVPTHKIMQRVD 399          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PORPU (Protein translocase subunit secA OS=Porphyra purpurea GN=secA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 94/196 (47.96%), Postives = 137/196 (69.90%), Query Frame = 2
Query:   50 FHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLP 637
            F F I+DEVDS+LIDE R PL+ISG +   V +Y     ++ +L + +HY V+ K  ++ LT++G    E  L  ++L+D  +PW  +++NA+KAKE + +DV YI+R+ + +I++E TGR+   RRWS+G+HQA+EAKE + IQ ++   A ITYQ+ F LYPKLSGMTGTAKTEE E  K++ + VI VPT+ P
Sbjct:  199 FAFCIIDEVDSILIDEARTPLIISGPSEAPVEKYTQTNLLSNILFKDVHYEVDEKARNIILTDKGTLFCEDHLSIDNLYDLENPWVHYILNAIKAKELFIKDVHYIIRDNQVVIVDEFTGRIMSGRRWSDGLHQAIEAKEQVPIQQENQTYASITYQNFFLLYPKLSGMTGTAKTEESELDKIYNLEVICVPTHRP 394          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_DEIGD (Protein translocase subunit secA OS=Deinococcus geothermalis (strain DSM 11300) GN=secA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 111/230 (48.26%), Postives = 147/230 (63.91%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVR-NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A + EQLV+R   P H+AIVDEVDS+LIDE R PL+ISG A K    Y V AK+ + L +G              YT++ K   V LTE+GIA  E  L   DL+  EN   A  +  A++A+E Y R+  YIV   G+ +II+E TGR    RR+ EG+HQA+EAKEG+KI+ ++  +A ITYQ+ F+LY K +GMTGTAKTEEKEFL ++   V+ +PTN P IR D
Sbjct:  189 MAQSREQLVLRADNPLHYAIVDEVDSILIDEARTPLIISGAAEKATDLYYVYAKLVKRLQRGEPAEPGKRTEPTGDYTIDEKGKQVHLTEQGIAKIERLLSLGDLYSPENMDKAHMITQAIRARELYHREKDYIVNAEGEVVIIDEFTGRSMPGRRYGEGLHQAIEAKEGVKIENENQTLATITYQNFFRLYDKFAGMTGTAKTEEKEFLDIYGSDVLVIPTNKPVIRQD 418          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PROMS (Protein translocase subunit secA OS=Prochlorococcus marinus (strain AS9601) GN=secA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.155e-50
Identity = 103/227 (45.37%), Postives = 147/227 (64.76%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A +  ++V R    F++ ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+++  L++              Y V+ K  S  LT++G A  E  L  NDL++  DPWA ++ NALKAKE + +DV YI++N +A+I++E TGRV   RRWS+G HQA+EAKE LKIQ ++  +A ITYQ+ F LYP L+GMTGTAKTEE EF K +++    +PTN    R D
Sbjct:  194 MATDISEVVQR---KFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAELSLALIKAKELSKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLGVNDLYNPQDPWAHYITNALKAKELFIKDVNYIIKNEEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTYKLESTVIPTNQIRKRQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_DEIRA (Protein translocase subunit secA OS=Deinococcus radiodurans GN=secA PE=3 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.155e-50
Identity = 110/230 (47.83%), Postives = 147/230 (63.91%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------------HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVR-NGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A + E LV+R   P H+AIVDEVDS+LIDE R PL+ISG A K    Y V AK+   L +G              YT+E K+ +V LTE+GI   E  L   DL+  EN   A  +  A++A+E Y R+  YIV   G+ +I++E TGR    RR+ EG+HQA+EAKEG+KI+ ++  +A ITYQ+ F+LY K +GMTGTAKTEEKEFL ++   V+ +PTN P IRVD
Sbjct:  189 MAQSKEALVLRADTPLHYAIVDEVDSILIDEARTPLIISGAAEKATDLYYVFAKLIRRLQKGEPAEPGVRTEPTGDYTIEEKSKAVHLTEQGITKIERLLSLKDLYSPENMDKAHMITQAIRARELYHREKDYIVNAEGEVVIVDEFTGRSMPGRRYGEGLHQAIEAKEGVKIENENQTLATITYQNFFRLYDKFAGMTGTAKTEEKEFLDIYGSDVLVIPTNKPVIRVD 418          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_HALOH (Protein translocase subunit secA OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=secA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 104/218 (47.71%), Postives = 147/218 (67.43%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            LA N + +V       H+AI+DEVDS+LIDE R PL+ISG A +    Y    ++   LV+G  Y V+ KN +V LTEEG+A  E  L  ++L+D+ N   A  +  ALKA    ++D  YIV++G+  I++E TGR+ E RR+SEG+HQA+EAKEG+ +  +S   A ITYQ+ F++Y KL+GMTGTA TEE+EF+K++ M V+++PTN P IR DL
Sbjct:  192 LAYNPDDVVQG---ELHYAILDEVDSILIDEARTPLIISGPAQETTKDYRKFNRIIPRLVKGRDYEVDEKNRTVHLTEEGLARVEKKLNISNLYDDQNFQLAHQLNQALKAHTLMKKDRDYIVKDGEVKIVDEFTGRIMEGRRFSEGLHQAIEAKEGVAVNKESQTFASITYQNFFRMYDKLAGMTGTAATEEEEFIKIYGMEVVQIPTNKPMIREDL 406          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PROM2 (Protein translocase subunit secA OS=Prochlorococcus marinus (strain MIT 9215) GN=secA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 103/227 (45.37%), Postives = 147/227 (64.76%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLH-----------YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A +  ++V R    F++ ++DEVDS+LIDE R PL+ISG+  +   +Y  AA+++  LV+              Y V+ K  S  LT++G A  E  L  NDL++  DPWA ++ NALKAKE + +DV YI++N +A+I++E TGRV   RRWS+G HQA+EAKE L+IQ ++  +A ITYQ+ F LYP L+GMTGTAKTEE EF K +++    +PTN    R D
Sbjct:  194 MATDVNEVVQR---KFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAQLSLKLVKAKELSKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLGVNDLYNPKDPWAHYITNALKAKELFIKDVNYIIKNNEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLQIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTYKLESTVIPTNQLRKRKD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_PROM0 (Protein translocase subunit secA OS=Prochlorococcus marinus (strain MIT 9301) GN=secA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.800e-50
Identity = 105/227 (46.26%), Postives = 146/227 (64.32%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAA-------KVAELLVQGLH----YTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +A +  ++V R    F++ ++DEVDS+LIDE R PL+ISG+  +   +Y  AA       K  EL   G+     Y V+ K  S  LT++G A  E  L  +DL++  DPWA ++ NALKAKE + +DV YI++N +A+I++E TGRV   RRWS+G HQA+EAKE LKIQ ++  +A ITYQ+ F LYP L+GMTGTAKTEE EF K +++    +PTN    R D
Sbjct:  194 MATDINEVVQR---KFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAELSLELLKAKELSKDGIDPEGDYEVDEKQRSCILTDQGFAKCEEYLGVSDLYNPQDPWAHYITNALKAKELFIKDVNYIIKNEEAVIVDEFTGRVMPGRRWSDGQHQAIEAKESLKIQPETQTLASITYQNFFLLYPGLAGMTGTAKTEEVEFEKTYKLESTVIPTNQTRKRQD 417          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ALKOO (Protein translocase subunit secA OS=Alkaliphilus oremlandii (strain OhILAs) GN=secA PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.800e-50
Identity = 97/204 (47.55%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +P ++AIVDEVDS+LIDE R PL+ISG+  K    Y +  +  + L + + + V+ K NSV LTEEG+  AE     ++L D EN   A  +  ALKA    + D  Y+V++G+ +I+++ TGR+   RR+SEG+HQA+EAKEGL++Q +S  +A IT+Q+ F++Y KLSGMTGTAKTEE EF+ ++ M V+E+PTN P +R+D
Sbjct:  200 RPLNYAIVDEVDSILIDEARTPLIISGQGDKSTKMYFIVDQFVKTLKKEVDFEVDEKANSVTLTEEGVERAEKYFAVDNLSDMENTELAHHINQALKANNLMKLDKDYVVKDGEIIIVDDFTGRLMFGRRYSEGLHQAIEAKEGLEVQRESKTLATITFQNYFRMYDKLSGMTGTAKTEEDEFISIYNMDVVEIPTNKPVVRID 403          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA_EMIHU1.949e-5147.62Protein translocase subunit secA OS=Emiliania huxl... [more]
SECA_GUITH3.324e-5145.83Protein translocase subunit secA OS=Guillardia the... [more]
SECA_PORPU9.672e-5147.96Protein translocase subunit secA OS=Porphyra purpu... [more]
SECA_DEIGD1.263e-5048.26Protein translocase subunit secA OS=Deinococcus ge... [more]
SECA_PROMS2.155e-5045.37Protein translocase subunit secA OS=Prochlorococcu... [more]
SECA_DEIRA2.155e-5047.83Protein translocase subunit secA OS=Deinococcus ra... [more]
SECA_HALOH2.814e-5047.71Protein translocase subunit secA OS=Halothermothri... [more]
SECA_PROM23.675e-5045.37Protein translocase subunit secA OS=Prochlorococcu... [more]
SECA_PROM04.800e-5046.26Protein translocase subunit secA OS=Prochlorococcu... [more]
SECA_ALKOO4.800e-5047.55Protein translocase subunit secA OS=Alkaliphilus o... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
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