CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA1_THEFY (Protein translocase subunit secA 1 OS=Thermobifida fusca (strain YX) GN=secA1 PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 100/202 (49.50%), Postives = 142/202 (70.30%), Query Frame = 2
Query:   53 HFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            H+AIVDEVDS+LIDE R PL+ISG A ++   Y   AK+A  L + + Y V+ K  +V +TE G+A  E  L  ++L++  N P   F+ NA+KAKE YRRD  YIV++G+ LI++E TGR+   RR++EG+HQA+EAKE +KI+ ++  +A+IT Q+ F+LY KL+GMTGTA TE  EF + + + V+ +PTN P IR DL
Sbjct:  203 HYAIVDEVDSILIDEARTPLIISGPAEQNSRWYVEFAKIAPRLRRDVDYEVDEKKRTVGITEAGVAKVEDWLGIDNLYESVNTPLISFLHNAIKAKELYRRDRDYIVKDGEVLIVDEFTGRILRGRRYNEGMHQAIEAKEKVKIKEENQTLAKITLQNYFRLYEKLAGMTGTAVTEAAEFQQTYNLGVVPIPTNKPMIREDL 404          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACLD (Protein translocase subunit secA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=secA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 99/212 (46.70%), Postives = 141/212 (66.51%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ+V R   P HFA++DEVDS+LIDE R PL+ISG+A+K    Y  A      L     YT ++K   V+LTEEG+  AE A    +L+D  +      +  ALKA     +DV Y+V +G+ +I++  TGR+ + RR+S+G+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V+ +PTN P  R D
Sbjct:  194 EQMVQR---PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKADQDYTYDVKTKGVQLTEEGMTKAEKAFGIENLFDVRHVALNHHIAQALKAHAAMHKDVDYVVEDGQVVIVDSFTGRLMKGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNKPIARDD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SACEN (Protein translocase subunit secA OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=secA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 96/200 (48.00%), Postives = 141/200 (70.50%), Query Frame = 2
Query:   56 FAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            F+IVDEVDS+LIDE R PL+ISG A +    Y   A++A +L +  HY V+ +  +V +TE+G+ + E  L   +L++  N P   ++ NALKAKE Y+RD  YIVRNG+ +I++E TGR+   RR++EG+HQA+EAKEG++I+A++  +A IT Q+ F+LY KL+GMTGTA+TE  EF   +++ V+ +PTN P  R D
Sbjct:  202 FSIVDEVDSILIDEARTPLIISGPADQSSRWYQEFARLAPMLKKDQHYEVDERKRTVGVTEDGVTIIEDQLGIENLYEAANTPLVGYLNNALKAKELYKRDKDYIVRNGEVVIVDEFTGRILHGRRYNEGMHQAIEAKEGVEIKAENQTLATITLQNYFRLYEKLAGMTGTAETEAAEFNGTYKLGVVPIPTNRPMARAD 401          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_WOLSU (Protein translocase subunit secA OS=Wolinella succinogenes GN=secA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.634e-48
Identity = 99/205 (48.29%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            K   FAIVDEVDS+LIDE R PL+ISG A++ +  Y +A  VA  L +  H+TV+ KN  + LTEEGI  AE     ++L+  EN   +  +  ALKA   +  D  Y++ NG+ +I++E TGR+ E RR+SEG+HQA+EAKEG++I+ +S  +A IT+Q+ F+LY KL+GMTGTA+TE  EFL+++++ VI +PTN+  +R DL
Sbjct:  203 KSHAFAIVDEVDSILIDEARTPLIISGPANRKLDNYKIANSVALSLQKEKHFTVDEKNRVILLTEEGIREAEKGFGVDNLYSIENAILSHHLDQALKANHLFAIDKDYVINNGEVVIVDEFTGRLSEGRRFSEGLHQALEAKEGVEIKEESQTLADITFQNYFRLYKKLAGMTGTAQTEASEFLQIYKLEVISIPTNVTVMRKDL 407          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA1_STAAR (Protein translocase subunit secA 1 OS=Staphylococcus aureus (strain MRSA252) GN=secA1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.634e-48
Identity = 104/213 (48.83%), Postives = 142/213 (66.67%), Query Frame = 2
Query:   17 SEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            SE  VMR   P HFAI+DEVDS+LIDE R PL+ISGEA K  + Y  A   A++L Q   Y  + K  SV LTE+G   AE   +  +L+D +N      +  AL+A    +RDV Y+V +G+ LI+++ TGR    RR+SEG+HQA+EAKEG++IQ +S  +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V ++PTN P  R D
Sbjct:  199 SEDRVMR---PLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKSVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRND 408          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BREBN (Protein translocase subunit secA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=secA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 98/216 (45.37%), Postives = 148/216 (68.52%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMN-----ALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ+V R   P  FAI+DEVDS+LIDE R PL+ISG A+K    Y + +   + L +   +T++ K   V LT++G++  E A   ++L+D     A   +N     ALKA+  ++RDV Y+V+ G+ +I++E TGR+   RR+S+G+HQA+EAKEGL++Q++S+ +A IT Q+ F++Y KL+GMTGTAKTEE+EF K++ + V+ +PTN P  RVD
Sbjct:  195 EQMVQR---PLFFAIIDEVDSILIDEARTPLIISGSANKSTELYYICSHFVKRLEEEKDFTIDEKLKIVNLTDDGVSKVEQAFNIDNLYDT----AHITLNHHITAALKAQVLFKRDVDYVVQEGEVVIVDEFTGRLMVGRRYSDGLHQAIEAKEGLRVQSESMTLATITLQNYFRMYEKLAGMTGTAKTEEEEFKKIYGLDVVVIPTNKPVQRVD 403          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACP2 (Protein translocase subunit secA OS=Bacillus pumilus (strain SAFR-032) GN=secA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 98/212 (46.23%), Postives = 143/212 (67.45%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ+V R   P H+A++DEVDS+LIDE R PL+ISG+A+K    Y  A      L     +T ++K  SV+LTE G+  AE A    +L+D ++      +  ALKA    ++DV Y+V  G+ +I++  TGR+ + RR+SEG+HQA+EAKEGL++Q +S+ +A IT+Q+ F++Y KLSGMTGTAKTEE+EF  ++ M V+ +PTN P +R D
Sbjct:  194 EQMVQR---PLHYAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKIEDDFTYDIKTKSVQLTESGMTKAEKAFGIENLFDVKHVALNHHIAQALKAHVAMQKDVDYVVEEGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEVQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMQVVTIPTNQPVVRDD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_BACC1 (Protein translocase subunit secA OS=Bacillus cereus (strain ATCC 10987) GN=secA PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ V R   P HFAI+DEVDS+L+DE R PL+ISG+A K    Y  A      L     Y+ ++K  +V LTE+GI  AE A    +L+D ++      +  AL+A     RD  Y+V+ G+ +I+++ TGR+ + RR+SEG+HQA+EAKEG++IQ +S+ +A IT+Q+ F++Y KLSGMTGTAKTEE+EF  ++ M VI +PTN P IR D
Sbjct:  194 EQCVQR---PLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQALRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA1_GEOTN (Protein translocase subunit secA 1 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=secA1 PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 98/204 (48.04%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +P +FA+VDEVDS+LIDE R PL+ISG A K    Y  A      L + + YT + K+ SV+LTEEG+  AE A   ++L+D ++      +  AL+A    +RDV Y+V++GK +I++  TGR+   RR+S+G+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE+EF  ++ M V+ +PTN P IR D
Sbjct:  199 RPLYFAVVDEVDSILIDEARTPLIISGTAQKSTKLYVQANAFVRTLRKDVDYTYDEKSKSVQLTEEGMNKAERAFGIDNLFDLKHVTLNHHIQLALRAHVTMQRDVDYVVQDGKVIIVDPFTGRLMHGRRYSDGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMRVVVIPTNRPVIRED 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA1_BACHK (Protein translocase subunit secA 1 OS=Bacillus thuringiensis subsp. konkukian GN=secA1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 2
Query:   20 EQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            EQ V R   P HFAI+DEVDS+L+DE R PL+ISG+A K    Y  A      L     Y+ ++K  +V LTE+GI  AE A    +L+D ++      +  AL+A     RD  Y+V+ G+ +I+++ TGR+ + RR+SEG+HQA+EAKEG++IQ +S+ +A IT+Q+ F++Y KLSGMTGTAKTEE+EF  ++ M VI +PTN P IR D
Sbjct:  194 EQCVQR---PLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQALRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDD 402          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA1_THEFY1.182e-4849.50Protein translocase subunit secA 1 OS=Thermobifida... [more]
SECA_BACLD1.544e-4846.70Protein translocase subunit secA OS=Bacillus liche... [more]
SECA_SACEN2.017e-4848.00Protein translocase subunit secA OS=Saccharopolysp... [more]
SECA_WOLSU2.634e-4848.29Protein translocase subunit secA OS=Wolinella succ... [more]
SECA1_STAAR2.634e-4848.83Protein translocase subunit secA 1 OS=Staphylococc... [more]
SECA_BREBN3.440e-4845.37Protein translocase subunit secA OS=Brevibacillus ... [more]
SECA_BACP23.440e-4846.23Protein translocase subunit secA OS=Bacillus pumil... [more]
SECA_BACC13.440e-4847.17Protein translocase subunit secA OS=Bacillus cereu... [more]
SECA1_GEOTN3.440e-4848.04Protein translocase subunit secA 1 OS=Geobacillus ... [more]
SECA1_BACHK3.440e-4847.17Protein translocase subunit secA 1 OS=Bacillus thu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
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