CN189339

Overview
NameCN189339
Unique NameCN189339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_TRIEI (Protein translocase subunit secA OS=Trichodesmium erythraeum (strain IMS101) GN=secA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = -3
Query:  139 DKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 363
            +K     P+   +   Y  + ++ E +   E ++V   GGLHVIGT  HESRRIDNQLRGRAGRQGDPGSTRF +
Sbjct:  606 EKAPTTEPVIEKLREVYNLIRQEYENYIEREHNQVVGCGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSTRFFL 680          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_THETN (Protein translocase subunit secA OS=Thermoanaerobacter tengcongensis GN=secA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  +L++ +     E  EV +LGGL+VIGT  HE+RRIDNQLRGRAGRQGDPG +RF +
Sbjct:  539 YFELLEEAKKETEKEHEEVVKLGGLYVIGTERHEARRIDNQLRGRAGRQGDPGESRFYI 597          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_PORYE (Protein translocase subunit secA OS=Porphyra yezoensis GN=secA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  + ++ E   S E   V + GGLHVIGT  HESRRIDNQLRGRAGRQGDPGS+RF +
Sbjct:  579 YQMIFEEFETIFSKEREYVSQAGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 637          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA2_MYCVP (Protein translocase subunit secA 2 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=secA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 42/85 (49.41%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  130 LIDKQSAMYPLGPTVA-----LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRYC 369
            L DK+     L PT +       +  V ++       E  EV  LGGL+V+GT  HESRRIDNQLRGR+GRQGDPG TRF V  C
Sbjct:  501 LTDKRLRSRGLHPTRSPEEYDAAWAEVRREVAAESRTEAREVVALGGLYVLGTERHESRRIDNQLRGRSGRQGDPGETRFYVSLC 585          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_OSTLU (Protein translocase subunit secA, chloroplastic OS=Ostreococcus lucimarinus (strain CCE9901) GN=secA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  139 EVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 291
            +V+ S E  EV  LGGLHV+GT  HESRR+DNQLRGR+GRQGDPGSTR+ +
Sbjct:  608 KVYTSAEKKEVLGLGGLHVVGTERHESRRVDNQLRGRSGRQGDPGSTRYFL 658          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GUITH (Protein translocase subunit secA OS=Guillardia theta GN=secA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  139 TVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 330
            T+   Y  +++  E   S E   V+ LGGLHVIGT  HESRRIDNQLRGRAGRQGDPGS+RF +
Sbjct:  570 TLRAVYQVLIEYYEKLLSPEKLRVQSLGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 633          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_DEIRA (Protein translocase subunit secA OS=Deinococcus radiodurans GN=secA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = -3
Query:  133 PTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRY 333
            P + L ++   ++       +   V+ LGGLH++GT  HESRRIDNQLRGRAGRQGDPGS+RF V +
Sbjct:  558 PGITLDFIRQAQELHRATVEDRQRVRDLGGLHIVGTERHESRRIDNQLRGRAGRQGDPGSSRFYVSF 624          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SYNSC (Protein translocase subunit secA OS=Synechococcus sp. (strain CC9605) GN=secA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = -3
Query:  139 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 273
            E S V+  GGLHVIGT  HESRR+DNQLRGRAGRQGDPGSTRF +
Sbjct:  641 EESRVREAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFL 685          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SPIOL (Protein translocase subunit secA, chloroplastic OS=Spinacia oleracea GN=secA PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            +L V K+ +     E ++V   GGLHVIGT  HESRRIDNQLRGR+GRQGDPGS+RF +
Sbjct:  687 FLEVAKEYKTFTDEEKNKVVLAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 745          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SYNP2 (Protein translocase subunit secA OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=secA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  139 PLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 342
            P+   +   Y ++ K      S E  EV + GGLHVIGT  HESRRIDNQLRGRAGRQGDPGSTRF +
Sbjct:  617 PVVQKLRTVYHAIEKTYHDLTSVEHDEVIQNGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSTRFFL 684          
The following BLAST results are available for this feature:
BLAST of CN189339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SECA_TRIEI7.196e-1452.00Protein translocase subunit secA OS=Trichodesmium ... [more]
SECA_THETN7.196e-1459.32Protein translocase subunit secA OS=Thermoanaeroba... [more]
SECA_PORYE7.196e-1462.71Protein translocase subunit secA OS=Porphyra yezoe... [more]
SECA2_MYCVP7.196e-1449.41Protein translocase subunit secA 2 OS=Mycobacteriu... [more]
SECA_OSTLU9.398e-1468.63Protein translocase subunit secA, chloroplastic OS... [more]
SECA_GUITH9.398e-1460.94Protein translocase subunit secA OS=Guillardia the... [more]
SECA_DEIRA9.398e-1452.24Protein translocase subunit secA OS=Deinococcus ra... [more]
SECA_SYNSC1.227e-1377.78Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SPIOL1.227e-1361.02Protein translocase subunit secA, chloroplastic OS... [more]
SECA_SYNP21.603e-1358.82Protein translocase subunit secA OS=Synechococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189339 ID=CN189339; Name=CN189339; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTTTAGAGTTTCTTATAATTTAAGTGTGAAAAGAGCCT
ACAGTTAACAGAAACAATTAATACTTGTACGGCTATGAGTTTATAATTTT
ATTCAAGAGGAAAACAAATCGCAAGAGGCACAGTACCTCACCATAAACCG
TGTTGATCCAGGATCCCCTTGCCGTCCTGCTCTGCCACGAAGCTGGTTAT
CTATTCTCCGAGACTCATGCAAAGATGTCCCAATCACATGAAGCCCCCCA
AGTCTTTTCACTTCAGACCCTTCATTGGAACAGTGAACTTCACAGTCCTT
TAAAACTGAGAGATAAGTCAGAGCTACAGTAGGGCCAAGAGGGTACATCG
CAGATTGTTTGTCAATGAGCTTCTGTAACTCTTTCAGATTCATCGACTGA
CTCATTTCCACAGATTCAGAGAAAAATGATTTTGCCTCTTGATATGTCCA
GCTCTTACCCTCAGCTTTGCCAACATATTTAGCCAATAGGGCTGCCTTAG
CTAGCAAAGCTAATGATGATGATCCAAGCTTTATCTCGGACAGTACCTTC
GGCGAGCTAGTTTTGTCATCAA
back to top