CN189339

Overview
NameCN189339
Unique NameCN189339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_BLOFL (Protein translocase subunit secA OS=Blochmannia floridanus GN=secA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = -3 
Query:  145 VKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 261
            V + GGLHVIGT  HESRRIDNQLRGR+GRQGD GS+RF
Sbjct:  550 VLKSGGLHVIGTERHESRRIDNQLRGRSGRQGDAGSSRF 588
[Close]
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_ALISL (Protein translocase subunit secA OS=Aliivibrio salmonicida (strain LFI1238) GN=secA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -3 
Query:  145 GGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 249
            GGLH+IGT  HESRRIDNQLRGRAGRQGD GS+RF
Sbjct:  552 GGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRF 586
[Close]
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA1_MYCVP (Protein translocase subunit secA 1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=secA1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = -3 
Query:  145 EGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 273
            E  +V   GGL+V+GT  HESRRIDNQLRGR+GRQGDPG +RF
Sbjct:  538 EAKDVIAAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRF 580
The following BLAST results are available for this feature:
BLAST of CN189339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SECA_BLOFL9.726e-1179.49Protein translocase subunit secA OS=Blochmannia fl... [more]
SECA_ALISL9.726e-1185.71Protein translocase subunit secA OS=Aliivibrio sal... [more]
SECA1_MYCVP9.726e-1169.77Protein translocase subunit secA 1 OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189339 ID=CN189339; Name=CN189339; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTTTAGAGTTTCTTATAATTTAAGTGTGAAAAGAGCCT
ACAGTTAACAGAAACAATTAATACTTGTACGGCTATGAGTTTATAATTTT
ATTCAAGAGGAAAACAAATCGCAAGAGGCACAGTACCTCACCATAAACCG
TGTTGATCCAGGATCCCCTTGCCGTCCTGCTCTGCCACGAAGCTGGTTAT
CTATTCTCCGAGACTCATGCAAAGATGTCCCAATCACATGAAGCCCCCCA
AGTCTTTTCACTTCAGACCCTTCATTGGAACAGTGAACTTCACAGTCCTT
TAAAACTGAGAGATAAGTCAGAGCTACAGTAGGGCCAAGAGGGTACATCG
CAGATTGTTTGTCAATGAGCTTCTGTAACTCTTTCAGATTCATCGACTGA
CTCATTTCCACAGATTCAGAGAAAAATGATTTTGCCTCTTGATATGTCCA
GCTCTTACCCTCAGCTTTGCCAACATATTTAGCCAATAGGGCTGCCTTAG
CTAGCAAAGCTAATGATGATGATCCAAGCTTTATCTCGGACAGTACCTTC
GGCGAGCTAGTTTTGTCATCAA
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