CN189339

Overview
NameCN189339
Unique NameCN189339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_HALOH (Protein translocase subunit secA OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  139 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 270
            G  VK LGGLHVIGT  HESRRIDNQLRGR+GRQGDPGS++F V
Sbjct:  499 GEGVKELGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFFV 542          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GEOSF (Protein translocase subunit secA OS=Geobacter sp. (strain FRC-32) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = -3
Query:  145 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 282
            C  E  EV  LGGLH++GT  HESRRIDNQLRGR+GRQGDPGS+RF
Sbjct:  549 CVKEHDEVVSLGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRF 594          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GEOBB (Protein translocase subunit secA OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = -3
Query:  145 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 282
            C+ E  EV  LGGLH++GT  HESRRIDNQLRGR+GRQGDPGS+RF
Sbjct:  608 CAVEHDEVVALGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRF 653          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_DEIGD (Protein translocase subunit secA OS=Deinococcus geothermalis (strain DSM 11300) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -3
Query:  133 VKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRY 261
            V+ LGGLH+IGT  HESRRIDNQLRGRAGRQGDPGS+RF V +
Sbjct:  582 VRELGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYVSF 624          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_DEIDV (Protein translocase subunit secA OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  133 SEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRY 267
            + V+ LGGLH+IGT  HESRRIDNQLRGRAGRQGDPGS+RF V +
Sbjct:  580 ARVQELGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYVSF 624          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_BIFA0 (Protein translocase subunit secA OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=secA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  145 LKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 303
            LK  +    +E  EVK+LGGL+V+GT  HESRRIDNQLRGR+GRQGDPG +RF
Sbjct:  531 LKKIKEQVKDEHEEVKKLGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRF 583          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_THET8 (Protein translocase subunit secA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=secA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  133 LSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRY 312
            L  +++    C  +   V+ LGGL +IGT  HESRRIDNQLRGRAGRQGDPG +RF V +
Sbjct:  638 LERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_THET2 (Protein translocase subunit secA OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=secA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  133 LSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRY 312
            L  +++    C  +   V+ LGGL +IGT  HESRRIDNQLRGRAGRQGDPG +RF V +
Sbjct:  638 LERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_RALEH (Protein translocase subunit secA OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=secA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = -3
Query:  145 IDKQSAMYPLGPTVALTYLSV-LKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 366
            ++KQS      P ++    +  +K  E    +   +VK  GGLH++GT  HESRRIDNQLRGRAGRQGDPGS+RF
Sbjct:  522 VEKQSGFIEADPNLSDAEKAARIKQLEDEWHSLHEQVKAAGGLHIVGTERHESRRIDNQLRGRAGRQGDPGSSRF 596          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_PORPU (Protein translocase subunit secA OS=Porphyra purpurea GN=secA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  + ++ E   S E   V + GGLHVIGT  HESRRIDNQLRGRAGRQGDPGS+RF +
Sbjct:  579 YQLIFQEYENIFSQEKKYVAQAGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 637          
The following BLAST results are available for this feature:
BLAST of CN189339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SECA_HALOH2.094e-1379.55Protein translocase subunit secA OS=Halothermothri... [more]
SECA_GEOSF2.094e-1373.91Protein translocase subunit secA OS=Geobacter sp. ... [more]
SECA_GEOBB2.094e-1373.91Protein translocase subunit secA OS=Geobacter bemi... [more]
SECA_DEIGD2.094e-1379.07Protein translocase subunit secA OS=Deinococcus ge... [more]
SECA_DEIDV2.094e-1375.56Protein translocase subunit secA OS=Deinococcus de... [more]
SECA_BIFA02.094e-1366.04Protein translocase subunit secA OS=Bifidobacteriu... [more]
SECA_THET82.734e-1356.67Protein translocase subunit secA OS=Thermus thermo... [more]
SECA_THET22.734e-1356.67Protein translocase subunit secA OS=Thermus thermo... [more]
SECA_RALEH2.734e-1350.67Protein translocase subunit secA OS=Ralstonia eutr... [more]
SECA_PORPU2.734e-1362.71Protein translocase subunit secA OS=Porphyra purpu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189339 ID=CN189339; Name=CN189339; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTTTAGAGTTTCTTATAATTTAAGTGTGAAAAGAGCCT
ACAGTTAACAGAAACAATTAATACTTGTACGGCTATGAGTTTATAATTTT
ATTCAAGAGGAAAACAAATCGCAAGAGGCACAGTACCTCACCATAAACCG
TGTTGATCCAGGATCCCCTTGCCGTCCTGCTCTGCCACGAAGCTGGTTAT
CTATTCTCCGAGACTCATGCAAAGATGTCCCAATCACATGAAGCCCCCCA
AGTCTTTTCACTTCAGACCCTTCATTGGAACAGTGAACTTCACAGTCCTT
TAAAACTGAGAGATAAGTCAGAGCTACAGTAGGGCCAAGAGGGTACATCG
CAGATTGTTTGTCAATGAGCTTCTGTAACTCTTTCAGATTCATCGACTGA
CTCATTTCCACAGATTCAGAGAAAAATGATTTTGCCTCTTGATATGTCCA
GCTCTTACCCTCAGCTTTGCCAACATATTTAGCCAATAGGGCTGCCTTAG
CTAGCAAAGCTAATGATGATGATCCAAGCTTTATCTCGGACAGTACCTTC
GGCGAGCTAGTTTTGTCATCAA
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