CN189329

Overview
NameCN189329
Unique NameCN189329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.849e-39
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 3
Query:  159 LKKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            +K+        +K V VGDGAVGKTCLLISY   TFPTDY+PT+F+N+  N+   NG  + L LWDTAGQE+Y+RLRPLSY  ADV ++ +S+ SK S +NV   W PE+KH+ P  PI+LVG K DL +          +  +  +  E L K +GA A+I+CS++
Sbjct:   62 MKRTNKLPDYHLKIVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFCPSTPIMLVGLKSDLYEADNL------SDLVEPSSAESLAKRLGAFAHIQCSAR 222          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 79/157 (50.32%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 659
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY+RLRPLSY  + V ++ F++ S  S +NV +KWI E+ H+   +PI+LV  K DLR+D +    +      P++T +G+ + + IGA  Y+ECS+KT
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKT 164          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHOV_BOVIN (Rho-related GTP-binding protein RhoV OS=Bos taurus GN=Rhov PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 80/162 (49.38%), Postives = 108/162 (66.67%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----HPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGK+ L++SYT N +P  Y PT  D FS  V+V+G+ V + LWDTAGQED +RLR L Y   DVF+  FS++  +S++N+++KW+PE++ + P  P++LVGT+ DLRDD    I        G VP   AQG  L + I A  Y+ECS+ TQ
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDLDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQ 191          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            K V VGDGA GKTCLLI ++  TFP  YVPTVF+N+ A+V V+G  + L LWDTAGQEDY+RLRPLSY  + V ++ FS+ +  S +NV +KWI E+ H+   +PI+LVG K+DLR+D +    +      PI+  +G+ + + IGA  Y+ECS+K
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAK 163          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD-KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P +PIILVG K    D+  +  +      P+     +E+   I A  Y+ECS+KT+
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAGDEHTRRELAKMKQEPVKPDDAKEMGSRIKAFGYLECSAKTK 163          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: CRL1_CANAL (GTP-binding RHO-like protein OS=Candida albicans GN=CRL1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 87/184 (47.28%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  111 VIFSEILYFGN*KATVLKKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT 659
            VI  E  Y  N K   L   K + +  +K V VGDG  GKTCLL++YT N FP+ YVPTVF+N+   V   NG TV L LWDTAGQE+Y+RLRPLSY   D+ ++ F++ ++ S ENV   W PE+ HY PG+PIILVGTK DL  D    ++H  ++ ++        K IGA   I  S+KT
Sbjct:   51 VIIEEDPYIPNYKELSLANKKTNYN--MKIVVVGDGGCGKTCLLLAYTQNKFPSIYVPTVFENYVTAVQSPNGKTVELALWDTAGQEEYDRLRPLSYPDVDILLVCFAVDNEVSLENVKDMWFPEVNHYCPGIPIILVGTKSDLLSD----MNHDASIRVA--------KEIGAIGLIFTSAKT 220          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.855e-37
Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = 3
Query:  153 TVLKKIKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            +  KK    +    K V VGDG  GKTCLLI ++S TFP  YVPTVF+N+  ++    N   + L LWDTAGQE+Y+RLRPLSY  ++V +L FS+   AS  NV++KW PE++H+ P  PI+LVG K DLR D+     +   G  P++  Q + +   + AP Y+ECS+K
Sbjct:    2 SAFKKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAP-YVECSAK 172          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.035e-37
Identity = 76/159 (47.80%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IK   VG+G +GKT +L+SYTSN+   +Y PTVFDN+S  ++ N    NL LWDTAGQE++++LR LSY   DVF+L FSLI+ +S+ N+   W+ EL    P  PI+LVGT++DL+ +      +     +PIST QG EL K I A  ++ECS+ TQ
Sbjct:    4 IKVCVVGEGGIGKTSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGTQMDLKSNSVILDRLCEKKQLPISTQQGIELSKKINAFDFVECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RACL_DICDI (Rho-related protein racL OS=Dictyostelium discoideum GN=racL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.588e-37
Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECS 650
            ++IK V  GDGAVGKT LLI++ S  FP DY PTVFDNFS   +      NLGL+DTAGQED++RLRPL Y   D+F++ +S+I+  SY NV  KW  E+K Y    +P+ILVGT+ DLR DK  +  +      PIS  +G  +RK IGA A+ ECS
Sbjct:    2 QYIKMVICGDGAVGKTSLLIAFASGEFPRDYQPTVFDNFSTLYMFQNKAYNLGLFDTAGQEDFDRLRPLGYNDTDLFLICYSVINPPSYANVYDKWYSEIKLYTGSEIPLILVGTQNDLRHDKATRETLALKQQAPISYEEGMMMRKRIGAKAFTECS 159          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO5_YEAST (GTP-binding protein RHO5 OS=Saccharomyces cerevisiae GN=RHO5 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 87/202 (43.07%), Postives = 113/202 (55.94%), Query Frame = 3
Query:  186 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN------------------------------LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----------PGVPIILVGTKLDLRDD--KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            R IKCV +GDGAVGKT LLISYT+N+FPTDYVPTVFDN+S  + +   T +                              + LWDTAGQEDY+RLRPL Y   D+F++ FS+   AS+ NV++KW+PELK  +              PI+LVGTK DLRDD   Q  +    +  +S  + +EL +  G   Y ECS+ TQ
Sbjct:    2 RSIKCVIIGDGAVGKTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGSLSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASFANVTEKWLPELKQTSNIEGTSLYTKLGKYPILLVGTKSDLRDDPATQKKLQEANSDYVSQEEIDELVQRCGFMGYTECSAATQ 203          
The following BLAST results are available for this feature:
BLAST of CN189329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO4_YEAST1.849e-3947.90GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]
RHO1_SCHPO4.119e-3950.32GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RHOV_BOVIN5.379e-3949.38Rho-related GTP-binding protein RhoV OS=Bos taurus... [more]
RHO5_SCHPO2.044e-3850.00GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RHO_DISOM7.768e-3849.68Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
CRL1_CANAL2.952e-3747.28GTP-binding RHO-like protein OS=Candida albicans G... [more]
RHO4_SCHPO3.855e-3745.35GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RACG_DICDI5.035e-3747.80Rho-related protein racG OS=Dictyostelium discoide... [more]
RACL_DICDI8.588e-3751.27Rho-related protein racL OS=Dictyostelium discoide... [more]
RHO5_YEAST1.122e-3643.07GTP-binding protein RHO5 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189329 ID=CN189329; Name=CN189329; organism=Citrus sinensis; type=EST; length=687bp
ACGTTGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGC
TAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTG
AGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAG
CCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCCAGAATGTGAAGGCAGTATTTGAT
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