CN189329

Overview
NameCN189329
Unique NameCN189329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO1_ENTHI (Ras-like GTP-binding protein RHO1 OS=Entamoeba histolytica GN=RHO1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 653
            +  + +K V VGDGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDTAGQE+Y+RLRPLSY  +DV +L F++ ++ S++N+S KW PE+KH    + +IL   K+DLR D         +  ++  +G++L + +G  AYIE SS
Sbjct:   16 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILDLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH----LYLILQRLKVDLRKDV--------SDDVTKQEGDDLCQKLGCVAYIEASS 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 68/154 (44.16%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK 656
            K V +GDGA GKT LL  +T   FP  Y PT+F+N+  ++ V+G+++ L LWDTAGQE+Y++LR LSY    V ++ F++ S+ S ENV  KW+PE+    PGV ++LV  K DLR   +  +DH  +  I   +G    K I A  Y+ECS+K
Sbjct:   15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDH--SKIIDYEEGLAAAKKINAVRYLECSAK 166          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RACI_DICDI (Rho-related protein racI OS=Dictyostelium discoideum GN=racI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 3
Query:  189 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV--PIILVGTKLDLRDDK---QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 653
            +IK + +GD   GKT ++++Y++ +FPT YVP+  D  S ++  N    ++G WD++   +++  RP +Y   +V IL FS+ S  S+ENVSKKWIPE++ YAP +  PIIL+GTK DLR+D+       ++    PIS  QG  L K I A  Y+ECSS
Sbjct:    5 YIKLLVLGDSKTGKTTMMMTYSTGSFPTGYVPSHVDATSLDIEYNKQVCHVGFWDSSALAEFDNTRPSTYPNTNVIILCFSIDSPTSFENVSKKWIPEIRQYAPSIHTPIILLGTKCDLREDENTINLLKENNQMPPISYKQGLALSKEIKATMYLECSS 164          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 64/154 (41.56%), Postives = 99/154 (64.29%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 653
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  I+  +G+ L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISEIRSNLPCTPVLVVATQTDQRE-----VGPHRASCINAIEGKRLAQDVRAKGYLECSA 153          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 63/154 (40.91%), Postives = 100/154 (64.94%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 653
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V+++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++  +G+ L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEVRSNLPCTPVLVVATQTDQRE-----VGPHRASCVNAIEGKRLAQDVRAKGYLECSA 153          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  195 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-AVPISTAQGEELRKLIGAPAYIECSSKT 659
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  +  V+G  V+L LWDTAGQE+Y RLRP SY  AD+ ++ F++ +  S  N   KW  E   Y P  PI+LVG K DLR +  F  +     VPI  A  +++ + IGA  Y+ECS+ T
Sbjct:    9 KLVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQEAHFKENATDEMVPIEDA--KQVARAIGAKKYMECSALT 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RHOH_HUMAN (Rho-related GTP-binding protein RhoH OS=Homo sapiens GN=RHOH PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 63/154 (40.91%), Postives = 100/154 (64.94%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 653
            IKCV VGD AVGKT LL+ +TS TFP  Y PTV++N   +V ++G  ++LGLWDTAG + +  +RPLSY+ ADV ++ +S+ +  S+ N+  KWI E++   P  P+++V T+ D R+     +    A  ++  +G++L + + A  Y+ECS+
Sbjct:    5 IKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQRE-----MGPHRASCVNAMEGKKLAQDVRAKGYLECSA 153          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RND3_RAT (Rho-related GTP-binding protein RhoE OS=Rattus norvegicus GN=Rnd3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  174 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS 653
            M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RND3_PONAB (Rho-related GTP-binding protein RhoE OS=Pongo abelii GN=RND3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  174 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS 653
            M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RND3_MOUSE (Rho-related GTP-binding protein RhoE OS=Mus musculus GN=Rnd3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  174 MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS 653
            M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+
Sbjct:   16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179          
The following BLAST results are available for this feature:
BLAST of CN189329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO1_ENTHI6.369e-3244.65Ras-like GTP-binding protein RHO1 OS=Entamoeba his... [more]
RHO3_SCHPO4.128e-3144.16GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RACI_DICDI4.128e-3142.50Rho-related protein racI OS=Dictyostelium discoide... [more]
RHOH_MOUSE1.201e-3041.56Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOH_BOVIN1.569e-3040.91Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RHO2_YEAST2.049e-3045.51GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]
RHOH_HUMAN2.676e-3040.91Rho-related GTP-binding protein RhoH OS=Homo sapie... [more]
RND3_RAT8.608e-2938.41Rho-related GTP-binding protein RhoE OS=Rattus nor... [more]
RND3_PONAB8.608e-2938.41Rho-related GTP-binding protein RhoE OS=Pongo abel... [more]
RND3_MOUSE8.608e-2938.41Rho-related GTP-binding protein RhoE OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189329 ID=CN189329; Name=CN189329; organism=Citrus sinensis; type=EST; length=687bp
ACGTTGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGC
TAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTG
AGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAG
CCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCCAGAATGTGAAGGCAGTATTTGAT
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