CN189329

Overview
NameCN189329
Unique NameCN189329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.694e-73
Identity = 129/162 (79.63%), Postives = 147/162 (90.74%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            +A+RFIKCVTVGDGAVGKTC+LI YT N FPTDY+PTVFDNFSANV V+GS VNLGLWDTAGQEDY+RLRPLSYRGADVFIL+FSLIS+ASYENV KKW+PEL+ +APGVP++LVGTKLDLR+D+ +  DHP +  I+T QGEELRKLIGA AYIECSSKTQ
Sbjct:    6 AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQ 167          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.826e-72
Identity = 128/161 (79.50%), Postives = 145/161 (90.06%), Query Frame = 3
Query:  180 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            A++FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PEL+ +AP VPI+LVGTKLDLRD + +  DHP A  I+TAQGEELRK IGA AYIECSSKTQ
Sbjct:    4 ATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQ 164          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.403e-71
Identity = 130/163 (79.75%), Postives = 144/163 (88.34%), Query Frame = 3
Query:  174 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            MSAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G  VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKLDLRDDK +  DH     I++ QGEELRK IGA AYIECSSKTQ
Sbjct:    1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQ 161          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.392e-71
Identity = 129/162 (79.63%), Postives = 146/162 (90.12%), Query Frame = 3
Query:  177 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            +A+ FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF+ANV+V+G TVNLGLWDTAGQEDYNR+RPLSYRGADVFILAFSLIS+ S+EN++KKW+PEL+HYAP VPI+LVGTK DLRD+ QF  ++PGA  I   QG+ELRK IGA AYIECSSK Q
Sbjct:   14 TATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQ 175          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 104/159 (65.41%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 104/159 (65.41%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 104/159 (65.41%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 104/159 (65.41%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 104/159 (65.41%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CN189329 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.558e-54
Identity = 102/159 (64.15%), Postives = 123/159 (77.36%), Query Frame = 3
Query:  192 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ 662
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P VPIILVGTKLDLRDDKQ    +      PI+  QG  + K I A  Y+ECS+ TQ
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQ 162          
The following BLAST results are available for this feature:
BLAST of CN189329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_ORYSJ5.694e-7379.63Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC2_ORYSJ2.826e-7279.50Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC7_ARATH1.403e-7179.75Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC9_ARATH2.392e-7179.63Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC1_RAT2.403e-5565.41Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE2.403e-5565.41Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN2.403e-5565.41Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CANFA2.403e-5565.41Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN2.403e-5565.41Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_DROME1.558e-5464.15Ras-related protein Rac2 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189329 ID=CN189329; Name=CN189329; organism=Citrus sinensis; type=EST; length=687bp
ACGTTGAACGCTTCAACGGCATAATTTCCCGGCCGAAACAAGATGATGGC
TAATTGAAGTTACGCTTGCGATCGCGGTTCTCCTCAGGCGTTGGGATCTG
AGGGTTGTTTGTTATTTTCTCTGAGATTTTATATTTTGGTAACTAAAAAG
CCACTGTCTTAAAAAAAATAAAAATGAGCGCATCAAGGTTTATTAAGTGC
GTGACGGTTGGCGATGGAGCTGTGGGTAAAACTTGTTTGCTGATTTCTTA
CACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTGTTTGATAATT
TCAGTGCAAATGTGGTTGTCAATGGCAGCACTGTTAATCTTGGATTATGG
GATACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTAAGTTACCG
TGGTGCAGATGTTTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTT
ATGAAAATGTATCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCT
GGTGTGCCAATAATCCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAA
GCAGTTCTTCATTGATCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGG
GGGAGGAGCTGAGGAAGCTGATTGGTGCACCTGCTTACATTGAATGCAGT
TCAAAAACACAGCCAGAATGTGAAGGCAGTATTTGAT
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