CN189328

Overview
NameCN189328
Unique NameCN189328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3215 contig Csv1_Contig3215:186..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.103e-39
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P VPIILVGTKLDLRDDKQ    +      PI+  QG  + K I A  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFDEAIRSVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.103e-39
Identity = 82/138 (59.42%), Postives = 99/138 (71.74%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.440e-39
Identity = 82/138 (59.42%), Postives = 99/138 (71.74%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 80/138 (57.97%), Postives = 101/138 (73.19%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 80/138 (57.97%), Postives = 101/138 (73.19%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 80/138 (57.97%), Postives = 100/138 (72.46%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 81/138 (58.70%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV+ KW PE+ H+AP VPIILVGTKLD+R+DK  Q  +      PIS  QG    K I A  Y+ECS+ TQ+ +K VFD AIR V+
Sbjct:   40 YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFDEAIRAVI 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +++++VV+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+I+ ASYENV  KW PE+  + P VPIILVGTK+D+RDD +    +     VPI   QG+EL K IGA  YIECS+ TQ N+K VF+ A+R VL
Sbjct:   40 YNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQANLKLVFEEAVRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV   W P+++H+ P  PIIL+GTKLDLRDDK+    +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct:   40 YSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 79/138 (57.25%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV+ KW PE+ H+AP VPIILVGTKLD+R+D+  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K VFD AIR V+
Sbjct:   40 YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFDEAIRSVI 177          
The following BLAST results are available for this feature:
BLAST of CN189328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
RAC2_DROME1.103e-3958.70Ras-related protein Rac2 OS=Drosophila melanogaste... [more]
RAC2_BOVIN1.103e-3959.42Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE1.440e-3959.42Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE2.457e-3957.97Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN2.457e-3957.97Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME4.190e-3957.97Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC1A_DICDI9.335e-3958.70Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RECG_ENTHI2.080e-3856.52Rho-related protein racG OS=Entamoeba histolytica ... [more]
RAC2_CAVPO2.080e-3857.25Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RAC1B_DICDI2.080e-3857.25Rho-related protein rac1B OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189328 ID=CN189328; Name=CN189328; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTTTCACAAAAGGTGTGCAACAATGTAATGCATTTCA
ACAATTAGAGCCGATCACAACAATTCCAACAAAACAATACAAAACCACCT
GATGATTCACAGAGAGATCCTCACAGTTTGTCAATTGAGATTTCTTCAAG
AGCATAGGAAGAAAGATGAGGGAGAATTTGAGAAAGGACAGAGGGTCATA
ATCTCTTTACACCTAATTTCAATCACAATATAGAGCAGGCCTTTTGTGCT
TTATTCTTTTTCTTCTTCGTCTTTGGTGGTTGGAGGACAACTCTGATGGC
TGCATCAAATACTGCCTTCACATTCTGCTGTGTTTTTGAACTGCATTCAA
TGTAAGCAGGTGCACCAATCAGCTTCCTCAGCTCCTCCCCCTGAGCTGTA
CTAATGGGCACGGCACCTGGATGATCAATGAAGAACTGCTTATCATCCCG
AAGATCAAGCTTTGTTCCAACAAGGATTATTGGCACACCAGGTGCATAAT
GTTTCAACTCTGGAATCCACTTCTTGGATACATTTTCATAACTTGCTTTG
CTAATAAGAGAGAATGCAAGAATGAAAACATCTGCACCACGGTAACTTAA
AGGTCTTAATCTGTTATAATCCTCTTGTCCAGCAGTATCCCATAATCCAA
GATTAACAGTGCTGCCATTGACAACCACATTTGCACTGAAA
back to top