CN189328

Overview
NameCN189328
Unique NameCN189328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3215 contig Csv1_Contig3215:186..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            ++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+IS AS+ENV +KW PE+ H+ PGVPII+VGT+ DLR+D      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:   40 YAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQRGLKTVFDEAIVAAL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/157 (44.59%), Postives = 98/157 (62.42%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            ++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PELK   P VP +L+GT++DLRDD +    + +    P++   G +L K IGA  Y+ECS+ TQ+ +KAVFD AI  +                CSI+
Sbjct:   58 YAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHPKKKKKRCSEGHSCCSII 214          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 73/138 (52.90%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:   40 YSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 73/138 (52.90%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:   40 YSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 73/138 (52.90%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            +SA   V+G TVNL LWDTAGQE+Y+RLR LSY   +VF++ FS+ S  SYENV  KW PE+ H+ P VPI+LVGTK DLR   D    +   G  PI+  QG+ L K I A  Y+ECS+  Q  VK VF  A+R VL
Sbjct:   40 YSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            ++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+IS  S+ENV +KW PE+ H+ PGVP ++VGT++DLRDDK     +      PI++ QG  L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:   40 YAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGTQIDLRDDKVIIEKLQRQRLRPITSEQGSRLARELKAVKYVECSALTQRGLKNVFDEAIVAAL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 68/138 (49.28%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            ++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+ S AS+ENV +KW PE+ H+ PGVP ++VGT++DLRDD   Q  +      P++  QGE L + +GA  Y+ECS+ TQ+ +K VFD AI   L
Sbjct:   40 YAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAAL 177          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.799e-32
Identity = 69/157 (43.95%), Postives = 98/157 (62.42%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            ++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PELK   P VP +L+GT++DLRDD +    + +    P++   G +L K IGA  Y+ECS+ TQ+ +KAVFD AI  +                C+I+
Sbjct:   58 YAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHPKKKKKGCLGCHGCCAII 214          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            + A + V+G  +NLGLWDTAGQED  +LRPLSY   D+F+L FS+IS+ S+ N+S KW+PE+KHY P   +++VGT  D R+D+     +      PI+T +GE+L K I A  Y+ECS+ T+  +  VFD AI +VL
Sbjct:   45 YMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSFNNISSKWLPEIKHYEPKCKMMVVGTNTDCRNDEAMIRKLADENQKPITTEEGEKLAKDIKAICYMECSALTRSGLNQVFDEAIHIVL 182          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  292 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 690
            +SANV+++G   NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S+AS+EN+  KW PE+ H+AP +PI+LVGTK DLR      +  P    +S A+   L + +G   Y+E S+  Q N++ +F  AIR
Sbjct:   40 YSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHD--LKRP---EVSAAEANNLVRELGFSGYVETSALLQTNLRELFSLAIR 167          
The following BLAST results are available for this feature:
BLAST of CN189328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
CDC42_CANAL3.436e-3350.72Cell division control protein 42 homolog OS=Candid... [more]
RHOJ_HUMAN1.705e-3244.59Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RHOG_MOUSE2.909e-3252.90Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN2.909e-3252.90Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR2.909e-3252.90Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
CDC42_YEAST2.909e-3248.55Cell division control protein 42 OS=Saccharomyces ... [more]
CDC42_SCHPO2.909e-3249.28Cell division control protein 42 homolog OS=Schizo... [more]
RHOJ_MOUSE3.799e-3243.95Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RACD_ENTHI4.962e-3247.83Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
RACA_DICDI6.480e-3249.62Rho-related protein racA OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189328 ID=CN189328; Name=CN189328; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTTTCACAAAAGGTGTGCAACAATGTAATGCATTTCA
ACAATTAGAGCCGATCACAACAATTCCAACAAAACAATACAAAACCACCT
GATGATTCACAGAGAGATCCTCACAGTTTGTCAATTGAGATTTCTTCAAG
AGCATAGGAAGAAAGATGAGGGAGAATTTGAGAAAGGACAGAGGGTCATA
ATCTCTTTACACCTAATTTCAATCACAATATAGAGCAGGCCTTTTGTGCT
TTATTCTTTTTCTTCTTCGTCTTTGGTGGTTGGAGGACAACTCTGATGGC
TGCATCAAATACTGCCTTCACATTCTGCTGTGTTTTTGAACTGCATTCAA
TGTAAGCAGGTGCACCAATCAGCTTCCTCAGCTCCTCCCCCTGAGCTGTA
CTAATGGGCACGGCACCTGGATGATCAATGAAGAACTGCTTATCATCCCG
AAGATCAAGCTTTGTTCCAACAAGGATTATTGGCACACCAGGTGCATAAT
GTTTCAACTCTGGAATCCACTTCTTGGATACATTTTCATAACTTGCTTTG
CTAATAAGAGAGAATGCAAGAATGAAAACATCTGCACCACGGTAACTTAA
AGGTCTTAATCTGTTATAATCCTCTTGTCCAGCAGTATCCCATAATCCAA
GATTAACAGTGCTGCCATTGACAACCACATTTGCACTGAAA
back to top